BtaINT0155326 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006395 | TUBGCP2
Description
Bos taurus tubulin, gamma complex associated protein 2 (TUBGCP2), mRNA. [Source:RefSeq mRNA;Acc:NM_001098149]
Coordinates
chr26:25955596-25956292:+
Coord C1 exon
chr26:25955596-25955716
Coord A exon
chr26:25955717-25956148
Coord C2 exon
chr26:25956149-25956292
Length
432 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGC
5' ss Score
3.27
3' ss Seq
CAACGGTGCCTTCCACGCAGGCC
3' ss Score
7.47
Exon sequences
Seq C1 exon
GTTTGCGGGCGCCTTCACGCTGCGGCAGCGGATGCTCAACTTCGTGCAGAACGTCCAGTACTACATGATGCTTGAGGTGGTGGAGCCGACCTGGCACGTCCTCGAGAAGAGCCTGAGATCT
Seq A exon
GTGAGCTCAGTCCAGCCAGCCCCGCGCCTGGGGGTCTGCAGAGCGGGGTCAGGGAGGCAGGGCCCGGGCCCCACGGCTCCCAGGAGGGGAGGCAGCATGCCCAGGACTCCTGGGCTCAGGCTGCTGGAGGATCGCATCCTTCCCTCAGAGCCTCGGCGCTGGGCGGGCACCCCATTCAGGGCCCGGGGCCCTTCAGCCAAGAACGTCACGTCACCAAACTCCAGGACTAAAAGCACAGCGAGCACTGTTTTTTGTCTTTAAAAACCAAAATCTTAGACCTTGTGGGGCACATTAAACGTGCTCTTTCAGCAGCATTTTGGAGGTTTTCCCTAAAGGCCCCAGGGTTGTTTAGAAGCGGAGCAGCGCGGCACGTGTGGCGGCCGTGGGGACGCGCTGCTGCCCCGCGGGCGCCCAACGGTGCCTTCCACGCAG
Seq C2 exon
GCCTCCACCATTGACGACGTGCTGGGGCACCATGCCAGCTTCCTGGATGGCTGCCTCAAGGACTGCATGCTGACCAACCCCGAGCTGCTGCGCGTCTTCTCCAAGCTCATGTCCGTGTGCGTCATGTTCACCAACTGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006395:ENSBTAT00000008383:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(7.7=100)
A:
NA
C2:
PF041308=Spc97_Spc98=PD(4.2=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCGGGCGCCTTCAC
R:
TGCATGCAGTTGGTGAACATG
Band lengths:
264-696
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]