HsaINT0175390 @ hg19
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin, gamma complex associated protein 2 [Source:HGNC Symbol;Acc:18599]
Coordinates
chr10:135096582-135097506:-
Coord C1 exon
chr10:135097386-135097506
Coord A exon
chr10:135096726-135097385
Coord C2 exon
chr10:135096582-135096725
Length
660 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GCTTGGCCTGTTCCCCGCAGGCC
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTTTGCTGGGGCTTTCACTCTGCGGCAGCGAATGCTCAACTTCGTCCAGAATATTCAATACTACATGATGTTTGAAGTGATGGAACCGACCTGGCACATCCTGGAGAAAAACCTGAAATCC
Seq A exon
GTGAGTTTTAGCTCCACAGATAATAACGTTTGAAAGCCACTTTCCTTTCACAGGGAGACAGGAAGTGCAGGAGAGGCAGGGCGAGGGGAGAGGCAGGGAGTGCAGGAGAGGCAGGGAATGCAGGGAGACGCAGGGAGTGCAGGAGAGGCAGGGAGTGCGGGAGAGGCAGGGCGTGCGGGAGAGGCAGGGAATGCGGGAGAGGCAGGGAGTGCAGGGAGACACGGAGTGCAGGAGAGGCAGGGCAAGGGGAGAGGAAGGGATCCCCCAGGGCGGGGCTGCACCCACACTGCTGGCCACACACGGGACCCCTTGCTGCCTGCCGTCCTAGGGGGACTCTGAGCCGTCTTTGCCCCGAGGTTGTCTCTCCCACATTGCGCATCTGAGGCTGAGGGGCCTGAAGGCAGAATCTGTTGGTACCAAATTCCAGAAGCTGCCGCAGCCTCCCTTCCTGTCTTCTGCCTTAAGAAATGAAACCCCTTCGGGGTGTGCCCATCATTTTTTTAGTGGTGTTTGGAAGTTTTCCCCTAAAAGCCCAAGGCCCATTTAAGAGGTAGAAGTGCGTAAACAGGAATGCACAAAGCCAGAACTGAGCACGTGCGCATGCAGGGCCCGTCTGTCAGCCACGTCTTTCTGAGAAGGGGCTTGGCCTGTTCCCCGCAG
Seq C2 exon
GCCTCCAACATTGACGACGTCCTTGGCCACCACACAGGCTTCCTGGACACCTGCCTGAAGGACTGCATGCTCACCAACCCCGAGCTGCTGAAGGTCTTCTCCAAGCTCATGTCTGTGTGCGTCATGTTCACCAACTGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640-TUBGCP2:NM_006659:14
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(12.1=100)
A:
NA
C2:
PF041308=Spc97_Spc98=PD(4.2=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGGGGCTTTCACTCTG
R:
TGCATGCAGTTGGTGAACATG
Band lengths:
263-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)