RnoINT0158281 @ rn6
Intron Retention
Gene
ENSRNOG00000018137 | Tubgcp2
Description
tubulin, gamma complex associated protein 2 [Source:RGD Symbol;Acc:1309597]
Coordinates
chr1:212336433-212337007:-
Coord C1 exon
chr1:212336887-212337007
Coord A exon
chr1:212336577-212336886
Coord C2 exon
chr1:212336433-212336576
Length
310 bp
Sequences
Splice sites
5' ss Seq
TCTGTGAGT
5' ss Score
7
3' ss Seq
TCTCGGACTTTTGCTTGCAGGCC
3' ss Score
8.74
Exon sequences
Seq C1 exon
GTTTGCTGGTGCTTTCACGTTGCGGCAGCGAATGCTCAACTTCGTCCAGAATATTCAGTACTACATGATGTTTGAAGTAATGGAACCGACCTGGCACATCCTTGAGAAAAACCTGAAATCT
Seq A exon
GTGAGTTTCTGCTCTATAAATTATAGTATCTGAAAGGCTCTTTCCCAGCCAGAGTGCATTTCATAGCACCATCATGTGCTAGCTAGGTGTCATGGCAGCCACAAAACTGTCCACAGCCTCCCATCTGCCTCCTTGCTGCCTATGTTCATGAGAGGTGAGGGGAGACAGAAAGAAGGGAGAGAGACAAGTAGGCTCTAAGAGATCACAGGCCCATTGAGACAGTGGCAGTGTGTAGGCAGTAGAGTACCAAGCCAGAACTGAAAACCACATGCCCAGTATCTTCGGTGAGGTCTCGGACTTTTGCTTGCAG
Seq C2 exon
GCCTCCAACATTGACGATGTCCTTGGCCACCACACAAGTTTCCTTGACAACTGCCTGAAGGACTGCATGCTGACCAACCCTGAGCTGCTGAAGGTTTTCTCCAAGCTCATGTCCGTGTGCGTCATGTTCACCAACTGTATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018137:ENSRNOT00000024573:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(7.7=100)
A:
NA
C2:
PF041308=Spc97_Spc98=PD(4.2=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTGCTGGTGCTTTCACGTT
R:
CATACAGTTGGTGAACATGACGC
Band lengths:
262-572
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]