GgaINT0044556 @ galGal4
Intron Retention
Gene
ENSGALG00000003526 | TUBGCP2
Description
gamma-tubulin complex component 2 [Source:RefSeq peptide;Acc:NP_001006496]
Coordinates
chr6:8883941-8885770:-
Coord C1 exon
chr6:8885650-8885770
Coord A exon
chr6:8884085-8885649
Coord C2 exon
chr6:8883941-8884084
Length
1565 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
TATGTACTATCCTCCAACAGGCT
3' ss Score
9
Exon sequences
Seq C1 exon
GTTTGCTGGTGCCTTCACACTGCGGCAGCGAATGCTGAATTTTGTGCAGAATATCCAGTATTACATGATGTTTGAAGTGATGGAGCCAACATGGCACATTCTCGAGAAGAACTTGAAATTG
Seq A exon
GTGAGTGTGTGTGCTTGAGAGAAGTCAGAACAGAAATCTTATGTTACCAAATGTAATGTAGGGAGAAGATGCCTTGTTTTAGTTACTGTTAAATGTTTTATTGGAGGAACTGTTCTCATCACACTACAAACAGTGCTGCTGTTCTGCATCACCTTTCTGCTTTGTTAGTCATGTATCCCTTTCCTCTATGGAACCCTCCAGTCTGTGCCCAACTTCCATGCTCTCTTCATCCTGTTATGGGAAAGCAACATTCTGCTGAACATCACCAAGAATAAAAAAGTATGGGTAAGGAAGAAGGATGTAAGGTGCAAAGATCACAAGCAGGTCCAGACATCTTCCTCTGATTCCTTGGCTGACTCACAGCTCTCTTAAAAGCTGCGTCAGTGCTTTCTCTTCCTTGGAGCTGCCAAATATTAGGTCTTTGAGGCAGGAAGAGGCCTTTGCACTTTATTTTTCATGCTAGGACTATTTGTAATAAAAAGGGTTTTTTCTCTTCGGATGGTTGTTCTTCTGGGCTATTTTCACTGCATTGGGCAAGGCTGGAGAACTTTTCCACCCTTGTGATGTCTGGGAGAGACTAAGCTCATTTCCAGCTGGTTTTTATGCCTGACAAAGAGGGTATCTGGGCAAAATATGCCTGACCTCTCCTTTCATGGACATACAGTGTCTGGGCTGAGATATTTTCTAAGTATGTAACGCAGTGTTCCTGGTTCATTGATCAAAATAAAGTCAGTGACTTCTCCAGAAGTTAACTCTTTGCCCTAGCACAAGCTCCAGGTAGCACTTTTTATCTCCTGATGGGCATATGAGATGCCTTTATCACCTCAGAGGGAAGCACATTCCCAGTGAGCGTCCTACCTCCCTGTTTTAAGCCACGAATGAGAAGACCCCAGAAGAATAGGAGCTGACATTCCAGAACACACTATTAAAGAAGCCTACAGAGGCCTTCTGAAATGTGATGACTCAGATTAGAAGGTTCCAGACAACAGAGAAAAAATCTGTTACTGGAAGACCAAGGATTTGTCTCTCTTAGATAAACACATCTTTCCTTTCCCTTTTTACCTGACTGCAGTAGTGGTCTGGACTTTTGAGTTACTGTTAGGCAAGTAAAATTCATTAGGCAAGTGAAGGATGATGCTTGATTACTGGCAGGTCTAGTGAAAGTTACAGCAACGCTGTGAATACATGTTATCTACCTTGCCATCAGCCTGGCCCAGCCTGCAGCTTTGTTGTTCCCCCAGAACATGTGTCAGAGCATTGGCTGGAATTACCTGGCCGTGGCCGGTTTCTGGCATACAAACAGCCTCTTTGGACAAGACTCTGTGGGAGGAAAATGTTAAAGAGGAAAAAAAGATGGCATCTTAGGTTGCTTTGGCACTGTTAACTAAAACAAGGGCAGAGACATAGGCTGCCTGCTCTGTGCTACATAGCAAATGGCTCCACTGTGTTCTGTGCGGTAATTTAGGCTTTCATCCTGGTGGGAGTTGAGCAGATACGTTGGCAGTGCTGGTCTAGAGCTTTGGTGTCCTGGTTTGGTTTTTCATTTATGTACTATCCTCCAACAG
Seq C2 exon
GCTTCTAATATTGATGATGTTCTGAGCCACCACACGAGCTTTCTGGACAACTGCCTGAAGGACTGCATGCTGACCAACCCCGAGCTGCTGAAGATCTTCTCCAAACTGATGTCTGTCTGTGTCATGTTCACAAACTGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003526:ENSGALT00000040987:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(7.7=100)
A:
NA
C2:
PF041308=Spc97_Spc98=PD(4.2=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGGTGCCTTCACACTG
R:
GCATGCAGTTTGTGAACATGACA
Band lengths:
262-1827
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]