HsaINT0175390 @ hg38
Intron Retention
Gene
ENSG00000130640 | TUBGCP2
Description
tubulin gamma complex associated protein 2 [Source:HGNC Symbol;Acc:HGNC:18599]
Coordinates
chr10:133283078-133284002:-
Coord C1 exon
chr10:133283882-133284002
Coord A exon
chr10:133283222-133283881
Coord C2 exon
chr10:133283078-133283221
Length
660 bp
Sequences
Splice sites
5' ss Seq
TCCGTGAGT
5' ss Score
8.93
3' ss Seq
GCTTGGCCTGTTCCCCGCAGGCC
3' ss Score
9.83
Exon sequences
Seq C1 exon
GTTTGCTGGGGCTTTCACTCTGCGGCAGCGAATGCTCAACTTCGTCCAGAATATTCAATACTACATGATGTTTGAAGTGATGGAACCGACCTGGCACATCCTGGAGAAAAACCTGAAATCC
Seq A exon
GTGAGTTTTAGCTCCACAGATAATAACGTTTGAAAGCCACTTTCCTTTCACAGGGAGACAGGAAGTGCAGGAGAGGCAGGGCGAGGGGAGAGGCAGGGAGTGCAGGAGAGGCAGGGAATGCAGGGAGACGCAGGGAGTGCAGGAGAGGCAGGGAGTGCGGGAGAGGCAGGGCGTGCGGGAGAGGCAGGGAATGCGGGAGAGGCAGGGAGTGCAGGGAGACACGGAGTGCAGGAGAGGCAGGGCAAGGGGAGAGGAAGGGATCCCCCAGGGCGGGGCTGCACCCACACTGCTGGCCACACACGGGACCCCTTGCTGCCTGCCGTCCTAGGGGGACTCTGAGCCGTCTTTGCCCCGAGGTTGTCTCTCCCACATTGCGCATCTGAGGCTGAGGGGCCTGAAGGCAGAATCTGTTGGTACCAAATTCCAGAAGCTGCCGCAGCCTCCCTTCCTGTCTTCTGCCTTAAGAAATGAAACCCCTTCGGGGTGTGCCCATCATTTTTTTAGTGGTGTTTGGAAGTTTTCCCCTAAAAGCCCAAGGCCCATTTAAGAGGTAGAAGTGCGTAAACAGGAATGCACAAAGCCAGAACTGAGCACGTGCGCATGCAGGGCCCGTCTGTCAGCCACGTCTTTCTGAGAAGGGGCTTGGCCTGTTCCCCGCAG
Seq C2 exon
GCCTCCAACATTGACGACGTCCTTGGCCACCACACAGGCTTCCTGGACACCTGCCTGAAGGACTGCATGCTCACCAACCCCGAGCTGCTGAAGGTCTTCTCCAAGCTCATGTCTGTGTGCGTCATGTTCACCAACTGCATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000130640:ENST00000252936:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF041308=Spc97_Spc98=FE(12.1=100)
A:
NA
C2:
PF041308=Spc97_Spc98=PD(4.2=45.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCTGGGGCTTTCACTCTG
R:
TGCATGCAGTTGGTGAACATG
Band lengths:
263-923
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains