BtaINT0155953 @ bosTau6
Intron Retention
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85085568-85087928:-
Coord C1 exon
chr6:85087862-85087928
Coord A exon
chr6:85085712-85087861
Coord C2 exon
chr6:85085568-85085711
Length
2150 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
3' ss Seq
TCTTGTGGCTTGTGTTTCAGCCT
3' ss Score
7.62
Exon sequences
Seq C1 exon
GTGCCAACAAGATTCAGAAGAACTGTTGAAACTAGCAACATCTATAAGTGAAACCTTGGAAGAGAAG
Seq A exon
GTGAATATTCAGTTTGGGTGTCAAAAATTGTATAACATAGAAATTTTCTATATATTAATGTTCTCTTAGCCTTCAAATTCCAGTTTTGCTATTTATTGACTCTTTGACAGTAGGCAAGTTACTTGACATTAAATTCAACTTGAGTTTTTCAAACCTTTGCCTCTTTTAATTAGATCGTTTTCTTATTGATTGAGTTCTTTATATATAGAAATCAGTTTTTTATCAGATACACATTTTATAGGTATTCTCTTCCAGTCGGTGGGTTGTCTTTTCATGTTATTACAATGTCTTTCAAGGAACAGAAGTTTTTAATATTGATAAAGTTTAATTCATCAGTTTTTTCTTTTTTACGGTTTGTGCCTTTGTTAAGCCAAAATCACAAAGCTTTTCTCCTTTATTTTCTTCTAGAAGATTGATTGTGTTGTGAGTTTGTGTTTATAGACCTTGCACAGTGTACATCATTATACATTTTGAACTCATTGTGTACAGTTTTGTAAATTTATGAATTCATCTTTTTCTACCTTGTCAGGCATAGAACTAAGTTAATTTTTTGTATCAGAATATCCAGTAATTCTAGACTGTTTATTGAAAAGACAGTTTTTTCTTCATTGTTTTTTTGGCTTCTTTGTCAGAAATTCATTGACCACATATGTGCACGGCTCTTTCTGAATTCAGTATTGTCTTCCATTGGTTGTTTCTGTCTTTCTACTAGTACCATCCTTTCTTGACTACTGTAGCTTTTAAATAAGACTTGAAATCACATGTGCTCTCTGGTGCATTTCTCAGAAAGAAAGTGAAAGTGTTAGTCACTCTGTCATGTCCAACTCTTTGCAACCCCATGGAATGTAGCCTGTCTGATTTCTCTGTCCGTGGATTCTCCAGGCAAGAATAATGGAGTGGGTAGCCATTCCCTTCTCCAGGGGATCTTCCCGACTCAGGGATTGAACCCAGGTCTCCTGCATCTGCAGATCTGAACCACCAGGGAAGCATTTCTCAGAAGGAGTTTAGAATTAACAGTATTCCCCTCTAAATACACAAATACTGTTATTTCATGTAGAATTTCAAGAGATTAATTGATCCCTACTTGAATCTTAAATTAAGATTACAGTTACTGATATTGAAAGAATAAGAAGAGAAAAGAGAAGCCAGAGCTCATGAAGAGATCTTTGTGACAAATAAGAAATTGTGCTAAAATAATAGCTCTAAAATCCAGATCTCCATTTTTTCCTTAAAAATACTAATAAATTATATTTTGAAAAACATCATCTTTAAGTATGATAATGAGAACTTTGTGATGAGTGGCCCTTAGATTAGTACGTAAAAGTGCCATTACTCTTTTGATTTTTTTTCTAAACTGCCTTTTCTTTTAAGATTTTTTTTTTTTTAGAGTTCTGTTTATTTATTTTTTGACTGTGCTGGGTCGTCTTTGCTGCGTGGGTTTTTCTCTAGTTACACCACATGGGGGCTACTCTGTAGTTGCAGTATGCAGGCTTCTCATCTTGGTAGCTTCCCTTGTTGCAGAATGCGGACTATCGAGGGTACACAGGCTTTAGCAGCTGCAACACGTGGGCTCAGTAGTTGCAGCTCCCAGGCTCTAGAGTACAGGCTCAACAGTTGTGATACACCAGCTTAGTTGCTTCTGTAAACTGCCTTTTCTAACAATACACTGCCTCATTTTGTTACTGTTTTACTTTTTATGTACCACTTAACGTAAAATGATAGCTCCTTATCCCTTCTTATCCTTGGACCATTTTATTTTTATTTATCTGGTTCAAGGTTTTACCATGTTTTTCATTAAAATGTGTCTTTAAAAATTCTGGCTAATTAACATCACAGAACTGTTCTCTAACAAGAACTATAAATGGTTGATAATCTAGTTAATTCTAAGTTGTTCCCTAGTGTAACGTGGAGAGTCAAAAAACAAAAATGCATGGGTACTGGTCAAGAAAAATACTGTTTAAGTTAACTGACATGCAGTTGGATCTTTTGTTATGAGATTGGGACTTTTTTTAGGATTTAAAAACTATTCTGGAAATTGAGTAGCTCTTTTAAAAGTTAAACTACAAATATTCTCACATCAAGTCATTGCAGTTTTGCATATACCATAAGAATACTATTAAAATTACTGTCTCTTGTGGCTTGTGTTTCAG
Seq C2 exon
CCTGAAGTAAATTATGACATCGTGCGTTGGCTTTCTTGGACTGCCCAAGGCTTTTTACCCCCACTTGCTGCAGCAGTAGGAGGCGTTGCCAGCCAAGAAGTACTGAAAGCTGTAACAGGAAAGTTTTCTCCTTTGTGCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837:ENSBTAT00000008985:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]