RnoINT0158994 @ rn6
Intron Retention
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23529684-23532475:+
Coord C1 exon
chr14:23529684-23529750
Coord A exon
chr14:23529751-23532331
Coord C2 exon
chr14:23532332-23532475
Length
2581 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
3' ss Seq
GTCTGTGGTTTGTGTTTTAGCCT
3' ss Score
9.09
Exon sequences
Seq C1 exon
GTGTCAGCAAGATTCAGATGAACTGTTGAAGCTAACAATATGTATAAGTGAAACCTTGGAAGAGAAG
Seq A exon
GTAAATATTAATAAAGTTGTGGTTGACTAGGTATCTGTTTATAATATAAATGCTCTACATACTGATATTTTCCTACATTTAGATCTTCCCTATGCTGACTGCTGATTCTGTGACGTTAATGAAGAAGCTCTTTTGCTTTGTTCTGCTTTCGTTTGTGTGTCTACAAAATTAGATGAACTCACCTTACAAGTTGTTGTGAACATTAATTAAATAGTTTTATTCATACAGTACTGATAATACAGTGTGTAGTTTAACAACTATTATTTGCTGCGTTTACTTTAAGTTTTAACATTGTATTATGTATCAAACTGCAAATATGTAGATTTTTAAATTGATAAATATTTTCATTTTTCTTGTGAGAATACCTAGAAATACATTGTAAAGTCATATAATAGATGTAAAATATGATGTTTAGTTTACAAGAAATTGGTGGTTTTTTGAGACAGGCCCTCATTAATAGCCCTCTCTGGTCTAAAACTCAGTATATGAAGACCAGCCCCAAATTCAGAGCGATCTTTCTGTCTTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATCCAACTGTCTTAACCTTTTGGGGTGCTGAGATTAAAGGTGTACATGAATATGACCAACCTTACGTGTTTTCAAAGCACCTGTACTATTTTGCATTTTTACAAGATCTGTATCAGGTTCAGTTGCAACAACCTCTTCAAAATTCTGTATTTCCTTTCCAATTGTAACCACGTTATTATTTGTAAGTGTATCACATAGATTTGAGCTGCATATCACTAAAATTACAATGAATCTGAGCCTATTTTTTACATGCCTCTATGACATTTGTACTTTTCTTTGAATAAGGTGGCTTTTCAAATCTTAGCTTATTTTTAATTAGTTTTTTTAAATTATTGGGGGTTCTATAGTTATATCTACAGTTTTTTTAAATAAGTCTTATTCAAATACATTCTTTGTAAATTCTCGTTATACTTATTGATTTTTTTTTCTCACAGTTTATGCCTCATTTTTTTCTAAAAGTTTTAGAATTTTGCAATGATTAGTTAGATCACGCCCAGGACTTATACATACTAGGTAGGCACTACCACTAAGCTATATCCACATCTATGACCTTTTTTTCTAAGGACTCGGAGTTCTTCTGTGCTCTTCTAAATGGATTATAGTTTGTCAGGGTTATAGTTTCTTTGAACTCATCAATAAAACTCTGATCCGAACTTTACTTTGTTGGACACTTACCCTTTTGCTTCTATTTGTTTGCTCATTTATGCTCATTTAGATGTGTTTTTGTGTTCTTTTGGTTCAATTTTGTTAGGTCATAGATGTCTAGAAAGTTACTCTTTTTTTCCTAGTTCCTGGTTTATTTTTTATAAGTATCCCTGTTCTCCTGCATTTCAGTGTTGCTCTCACACACCTTATTTTCATCTCTAGTTTTAGTTACTTGGATTTCCTCCTTCCTTCCTTCCTTTTGGTTATTTTGACAGTGCATTAATCTTTTCTCCTTTCACAGAATCTTAGGTTCATTATTTTAGTTTCTACTCAATTTCTGATCTGCATTACTTATAGTACCAGTTTCTGTTCTTTGAGTTCAGTTATTGGGTTGTCTTGCTGTTCATATTTCTTATATTTATGCATTATTATTTGTACACCTGTTGGGACATAACACCTTTTCCTGGCTTTGTATGATGACCTTTGTGGGAATCTTTTTATTGAACTCTTAATCCTCACTGCTGCTCAAGGAGAGGTAACCACAGTAGTGACAATAACAATTTAAAAGCAAACCAGATAGAGACTTTAAAAAAAAATGCCAAATATAAATAAGAATTTCACCTTTAGTACTAATAGACAAGAAATACTTTAGGAAGTAGGGTAAATGAGTAAAGATGTAAAAGTATTGAGCAGTAAGAACTTAAGCAATAGGAGGTGATAGAGAAAGGATAAAAAGCAGGATGGACCAGAAAATGGGGGATGCTGTTAGAGACTGTAACCATGAAGGAGAACACAGCACCAGGCTGGTTGGTGGGTCTTCCATGCCAAGGGCTTGCAGGTGGGGTTGCTTTATTTTCCTCCCTCAAGCCTGTCATTTTGCAATTTACTTGATTTTGGGGTTAAGTAACGGGGTGGTGGCATCCACCTTTAGTCCTAGTACCAGGGAGACAGATGCCTCTGATCTTAAGGCTAGCCTGCTTTACTGCATGCGTTCCAGGATAGCTAAGGATCTCTCCACAAAAAACAAAAGAACAAAAACAACAACAACAACAAAGAGGGTATTGAGTTGTTTGCTCTCTGACACCAGATACTCTAAATGGCAGTCTAGACTACAGTCACAGAAGCAAAATTGAACAGAGACTAGTAAATGAAAAAGCCGCTTAAGGTAACATGCAAGTTGATATTTTTATTATGAGATAAAGATTTTTATTTAGAAGGACATTTAGTAGTTTGTGTTGGGTTTGTTTGTTTTTTTGGAAGTTAGGTTCTAAGGATTTTAATAACTTAGTTCCTGAAGTCACAGGTACTGTGTGTGGATACTGTTAGTATCACTGATGTCTGTGGTTTGTGTTTTAG
Seq C2 exon
CCTGAGGTGAATGCTGACATTGTGCACTGGCTTTCATGGACTGCTCAAGGCTTTTTACCCCCACTTGCTGCTGCAGTCGGGGGTGTTGCTAGCCAAGAAGTATTAAAAGCTGTGACCGGGAAGTTTTCTCCTTTGTGTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931:ENSRNOT00000037509:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]