GgaINT0070348 @ galGal4
Intron Retention
Gene
ENSGALG00000011762 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr4:51052240-51052856:-
Coord C1 exon
chr4:51052790-51052856
Coord A exon
chr4:51052384-51052789
Coord C2 exon
chr4:51052240-51052383
Length
406 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTTTTGTTCTTTCTTTAAGCCT
3' ss Score
8.25
Exon sequences
Seq C1 exon
ATGCCATCAAGATGCTGAGGAAATGCTGAAAATAGCCATATCAATAAGTGAAACCCTGGAAAACAAA
Seq A exon
GTGAGTAGCAAATGAGTATCATGAATAATTTCTAATATACTTGGTTGTCTGAAGGTCACGCTTTAGTTTTTGGCCCTTGTTCTGATCTTTGTATGCATCTTTAGATGAATTTGGTGATTTTCTGACGGCCACGCAAGAAGTTATTACGGTATGTCAGCACTAGTCCAACCACATGGTTGCCTAAACTGAAAGATGAATCCATGTGACTGTGTATGTTTAGTTTTAGATAGCTGCTTGTTAGAAGATCAGGATATGTAATGGGTCTGCCTTTGCTGGAAACCATTTTTGTAGTCAGAGTGAGGTCGTTTCTTTCTTTTGCTATAGATCAGTAGTTTTGACACTGTGAAGTGATGACTTGATCTGTTGAAGGGATATATGTACATTGTTGTTTTGTTCTTTCTTTAAG
Seq C2 exon
CCTCAGGTAAATGGAGATGTAGTGAAGTGGCTGTCCAGAACTGCTCAGGGATTTCTAGCTCCTCTGGCAGCAGCAGTGGGTGGTGTTGCTAGCCAGGAAGTCCTGAAAGCAGTAACAGGAAAATTTTCTCCATTGCAGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762:ENSGALT00000019202:14
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCAAGATGCTGAGGAA
R:
TGCTGCAATGGAGAAAATTTTCCTG
Band lengths:
206-612
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]