DreINT0022000 @ danRer10
Intron Retention
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19175115-19175401:+
Coord C1 exon
chr1:19175115-19175181
Coord A exon
chr1:19175182-19175257
Coord C2 exon
chr1:19175258-19175401
Length
76 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
TAATGAGTCTGTGTTGTCAGGTA
3' ss Score
3.45
Exon sequences
Seq C1 exon
TTGTTTGCAGGATTCAGAGCTGCTTCTGAAATATACAGAGGAGATCAGCAAAACACTTAAAAACAAG
Seq A exon
GTCAGTTTTTTGTTTACATGGTAACCTCTGTTGCTTGCAGCTTCATGTTTAAATGTTAATGAGTCTGTGTTGTCAG
Seq C2 exon
GTATGCATAAATCCGGATCTGGTGAGGTGTGTGTCGCGCTGTGCCAGAGGGTGTTTGTTTCCTCTAGCGGCGACAGTGGGGGGCATCGCTAGTCAGGAGGTCTTAAAGGCTCTCACTGGGAAGTTTTCCCCTCTTCAACAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019:ENSDART00000111454:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCAGGATTCAGAGCTGCT
R:
AGACCTCCTGACTAGCGATGC
Band lengths:
167-243
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]