RnoEX6042028 @ rn6
Exon Skipping
Gene
ENSRNOG00000021931 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:RGD Symbol;Acc:1308324]
Coordinates
chr14:23529063-23532475:+
Coord C1 exon
chr14:23529063-23529139
Coord A exon
chr14:23529684-23529750
Coord C2 exon
chr14:23532332-23532475
Length
67 bp
Sequences
Splice sites
3' ss Seq
ACTTTTGTTTTAATTTACAGGTG
3' ss Score
11.81
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GCACCTTTACAGATTCATGTAGCCATGCTTGCCTTGGACCAGTTTCAGGAAAACTACAGTCGTAAGCCAAATATCAG
Seq A exon
GTGTCAGCAAGATTCAGATGAACTGTTGAAGCTAACAATATGTATAAGTGAAACCTTGGAAGAGAAG
Seq C2 exon
CCTGAGGTGAATGCTGACATTGTGCACTGGCTTTCATGGACTGCTCAAGGCTTTTTACCCCCACTTGCTGCTGCAGTCGGGGGTGTTGCTAGCCAAGAAGTATTAAAAGCTGTGACCGGGAAGTTTTCTCCTTTGTGTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021931-'18-18,'18-16,19-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCTTGCCTTGGACCAGTTT
R:
GAAAACTTCCCGGTCACAGCT
Band lengths:
181-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]