MmuEX6018423 @ mm10
Exon Skipping
Gene
ENSMUSG00000035898 | Uba6
Description
ubiquitin-like modifier activating enzyme 6 [Source:MGI Symbol;Acc:MGI:1913894]
Coordinates
chr5:86144335-86147881:-
Coord C1 exon
chr5:86147805-86147881
Coord A exon
chr5:86147075-86147141
Coord C2 exon
chr5:86144335-86144478
Length
67 bp
Sequences
Splice sites
3' ss Seq
ATTTTTGTTTCAAACTATAGATG
3' ss Score
6.67
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GCACCTTTAGAGATTCATCTCGCTATGCTTGCCTTGGACCAGTTTCAGGAGAACTATAACCGTAAGCCAAATATCAG
Seq A exon
ATGTCAGCAGGATTCAGATGAACTATTGAAGCTAACAGTATCTATAAATGAAACCTTGGAAGAGAAG
Seq C2 exon
CCTGAAGTGAATGCTGACATTGTGCACTGGCTTTCGTGGACTGCCCAAGGCTTTTTACCACCACTCGCTGCTGCAGTTGGAGGTGTTGCTAGCCAAGAAGTCTTAAAAGCTGTGACGGGGAAGTTCTCGCCCTTGTGTCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035898-'17-18,'17-17,18-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTTGGACCAGTTTCAGGAG
R:
GAACTTCCCCGTCACAGCTTT
Band lengths:
173-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types