GgaEX6034914 @ galGal3
Exon Skipping
Gene
ENSGALG00000011762 | UBA6
Description
NA
Coordinates
chr4:53147779-53149150:-
Coord C1 exon
chr4:53149074-53149150
Coord A exon
chr4:53148329-53148395
Coord C2 exon
chr4:53147779-53147922
Length
67 bp
Sequences
Splice sites
3' ss Seq
GTTTTCACCCTCATGTCCAGATG
3' ss Score
6.89
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
Exon sequences
Seq C1 exon
GCACCTTTGCAAATCCACATTGCCATGCTCGCATTGAACCACTTTGAGGAGAACTTTGGTCGCATGCCAAACATTGG
Seq A exon
ATGCCATCAAGATGCTGAGGAAATGCTGAAAATAGCCATATCAATAAGTGAAACCCTGGAAAACAAA
Seq C2 exon
CCTCAGGTAAATGGAGATGTAGTGAAGTGGCTGTCCAGAACTGCTCAGGGATTTCTAGCTCCTCTGGCAGCAGCAGTGGGTGGTGTTGCTAGCCAGGAAGTCCTGAAAGCAGTAACAGGAAAATTTTCTCCATTGCAGCAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011762-'12-17,'12-16,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAAATCCACATTGCCATGC
R:
GACTTCCTGGCTAGCAACACC
Band lengths:
172-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]