DreEX6031167 @ danRer10
Exon Skipping
Gene
ENSDARG00000080019 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:HGNC:25581]
Coordinates
chr1:19173708-19175401:+
Coord C1 exon
chr1:19173708-19173784
Coord A exon
chr1:19175115-19175181
Coord C2 exon
chr1:19175258-19175401
Length
67 bp
Sequences
Splice sites
3' ss Seq
TTTTTCTTGTTTGTCTGTAGTTG
3' ss Score
9.24
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
Exon sequences
Seq C1 exon
GTCCCTCTTCAGCTCCATGCGATCATGCTAGCTTTGGATGCTTTCCTGGAACAGCATGCTAGACTGCCCAATATTGG
Seq A exon
TTGTTTGCAGGATTCAGAGCTGCTTCTGAAATATACAGAGGAGATCAGCAAAACACTTAAAAACAAG
Seq C2 exon
GTATGCATAAATCCGGATCTGGTGAGGTGTGTGTCGCGCTGTGCCAGAGGGTGTTTGTTTCCTCTAGCGGCGACAGTGGGGGGCATCGCTAGTCAGGAGGTCTTAAAGGCTCTCACTGGGAAGTTTTCCCCTCTTCAACAATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000080019-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCTCCATGCGATCATGCTA
R:
AGACCTCCTGACTAGCGATGC
Band lengths:
171-238
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]