HsaEX6084563 @ hg19
Exon Skipping
Gene
ENSG00000033178 | UBA6
Description
ubiquitin-like modifier activating enzyme 6 [Source:HGNC Symbol;Acc:25581]
Coordinates
chr4:68514786-68528933:-
Coord C1 exon
chr4:68528857-68528933
Coord A exon
chr4:68527907-68527973
Coord C2 exon
chr4:68514786-68514929
Length
67 bp
Sequences
Splice sites
3' ss Seq
TGTTCTGTTTTGAGTTGTAGATG
3' ss Score
3.74
5' ss Seq
AAGGTGACT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GCACCTTTAGAGATTCACACAGCTATGCTTGCCTTGGACCAGTTTCAGGAGAAATACAGTCGCAAGCCAAATGTTGG
Seq A exon
ATGCCAACAAGATTCAGAAGAACTGTTGAAACTAGCAACATCTATAAGTGAAACCTTGGAAGAGAAG
Seq C2 exon
CCTGATGTAAATGCTGACATTGTGCATTGGCTCTCTTGGACTGCCCAAGGCTTTTTATCTCCACTTGCTGCAGCAGTAGGAGGTGTTGCCAGCCAAGAAGTATTGAAAGCTGTAACAGGAAAATTTTCTCCTTTGTGCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000033178-'15-16,'15-14,17-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCACACAGCTATGCTTGCCT
R:
TACTTCTTGGCTGGCAACACC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)