BtaEX6031467 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000006837 | UBA6
Description
Bos taurus ubiquitin-like modifier activating enzyme 6 (UBA6), mRNA. [Source:RefSeq mRNA;Acc:NM_001083438]
Coordinates
chr6:85085568-85088472:-
Coord C1 exon
chr6:85088396-85088472
Coord A exon
chr6:85087862-85087928
Coord C2 exon
chr6:85085568-85085711
Length
67 bp
Sequences
Splice sites
3' ss Seq
TACTTTATTTTGAATTCTAGGTG
3' ss Score
9.11
5' ss Seq
AAGGTGAAT
5' ss Score
6.38
Exon sequences
Seq C1 exon
GCACCTTTAGAGATTCACTTAGCCATGCTTGCCTTGGACCAGTTTCAGGAGAACTATAGTCGCAAGCCAAATATTGG
Seq A exon
GTGCCAACAAGATTCAGAAGAACTGTTGAAACTAGCAACATCTATAAGTGAAACCTTGGAAGAGAAG
Seq C2 exon
CCTGAAGTAAATTATGACATCGTGCGTTGGCTTTCTTGGACTGCCCAAGGCTTTTTACCCCCACTTGCTGCAGCAGTAGGAGGCGTTGCCAGCCAAGAAGTACTGAAAGCTGTAACAGGAAAGTTTTCTCCTTTGTGCCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000006837-'13-18,'13-17,14-18=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.038 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTTAGCCATGCTTGCCTT
R:
AGTACTTCTTGGCTGGCAACG
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]