BtaINT0155985 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50995806-50996252:+
Coord C1 exon
chr22:50995806-50995971
Coord A exon
chr22:50995972-50996049
Coord C2 exon
chr22:50996050-50996252
Length
78 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
CCCTTTGCCTCCCTTGCCAGGGG
3' ss Score
10.29
Exon sequences
Seq C1 exon
AGGAAAAAGGCAGAGGTGGCTGCAGAGGCCACTCGCCGCCTGAATGCAGACTTGCAGGTTACCCCACTCAACCTCCAGCTGGATCCCACTACAGAGGACATCTTTGGGGATGACTTCTTCTCTGGTGTGAATGGCGTGGCTGCTGCCCTGGACACTTTTGAGGCCC
Seq A exon
GTGAGTGCCCAGCCTCGGAACTCACTCTTGTCTGAGGCTGTGCCAGCCCCACTTCTGACCCTTTGCCTCCCTTGCCAG
Seq C2 exon
GGGACTACGTAGCTGCTCGCTGCACCCATTTTCTGAAACCACTGCTGGAGGCGGGCACCATGGGCACCCGGGGCAGCGCTAGCGTGTTCATACCGCACGTGACTGAGAACTACAAAGCCCCCTCTGATGCAGCTTCTGAAGATGCCCCCGACCCTGTCTGCACCGTGCGGTACATTCCTGCCACAACCGAGCACACCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.103
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(37.9=100)
A:
NA
C2:
PF0089916=ThiF=PD(20.7=44.1),PF105854=UBA_e1_thiolCys=PU(74.5=51.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCTGGTGTGAATGGCGTG
R:
GCATCAGAGGGGGCTTTGTAG
Band lengths:
179-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]