MmuINT0168875 @ mm9
Intron Retention
Gene
ENSMUSG00000032596 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:MGI Symbol;Acc:MGI:1349462]
Coordinates
chr9:107881187-107881636:+
Coord C1 exon
chr9:107881187-107881352
Coord A exon
chr9:107881353-107881430
Coord C2 exon
chr9:107881431-107881636
Length
78 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
ACCCTCTGCCCCTTTGCCAGGGC
3' ss Score
7.4
Exon sequences
Seq C1 exon
AGGCCCAAGGCAGAGGTGGCCGCCGCAGCAGCCCATCGTCTCAACCCAGACCTACGAGCGACTCCATATACCTGCCCACTGGATCCCACCACAGAGGATATCTACGATGACAGCTTTTTCTCCAGGGTGAACGGTGTTGTTGCTGCTTTGGACAGCTTCCAGGCCC
Seq A exon
GTGAGTGCCTTACTGGGAGCTGAGCCCCTTGCCCAAGCCCCTGGCAGCCTCACTCCTCACCCTCTGCCCCTTTGCCAG
Seq C2 exon
GGCACTATGTCGCTGCTCGATGCACCCACTATCTGAAGCCACTGCTGGAGGCCGGCACCCAGGGCACCTGGGGGAGTGCTTCAGTGTTTGTGCCCTATGTGACAGAAGCCTACAGAGGTCCTGCCTCGGATGCAGCTTCTGAGGATGCTCCCTACCCTGTGTGTACCCTGAGGCACATCCCCAGCTCGATGGAGCACAGCGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032596-Uba7:NM_023738:13
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.004
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(37.9=100)
A:
NA
C2:
PF0089916=ThiF=PD(20.7=43.5),PF105854=UBA_e1_thiolCys=PU(75.0=52.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTCTCAACCCAGACCTACGA
R:
GTGGCTTCAGATAGTGGGTGC
Band lengths:
172-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: