HsaINT0176105 @ hg38
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr3:49809978-49810428:-
Coord C1 exon
chr3:49810263-49810428
Coord A exon
chr3:49810184-49810262
Coord C2 exon
chr3:49809978-49810183
Length
79 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
ACCCACTGCTCCCTTGCCAGGGC
3' ss Score
7.77
Exon sequences
Seq C1 exon
AGACCCAAGGCAGAGGTGGCTGCAGCAGCTGCCCGGGGCCTGAACCCAGACTTACAGGTGATCCCGCTCACCTACCCACTGGATCCCACCACAGAGCACATCTATGGGGATAACTTTTTCTCCCGTGTGGATGGTGTGGCTGCTGCCCTGGACAGTTTCCAGGCCC
Seq A exon
GTGAGTGCTTGACTTCGGAGGTCAGTCCCTTGCCCACAGCTGTGCCAGTCCCACTTCTGACCCACTGCTCCCTTGCCAG
Seq C2 exon
GGCGCTATGTGGCTGCTCGTTGCACCCACTATCTGAAGCCACTGCTGGAGGCAGGCACATCGGGCACCTGGGGCAGTGCTACAGTATTCATGCCACATGTGACTGAGGCCTACAGAGCCCCTGCCTCAGCTGCAGCTTCTGAGGATGCCCCCTACCCTGTCTGTACCGTGCGGTACTTCCCTAGCACAGCCGAGCACACCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179:ENST00000333486:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(38.2=100)
A:
NA
C2:
PF0089916=ThiF=PD(20.1=42.0),PF105854=UBA_e1_thiolCys=PU(75.0=52.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCTGAACCCAGACTTACAGG
R:
GTGGCTTCAGATAGTGGGTGC
Band lengths:
171-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains