RnoINT0159026 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116757479-116757919:+
Coord C1 exon
chr8:116757479-116757644
Coord A exon
chr8:116757645-116757722
Coord C2 exon
chr8:116757723-116757919
Length
78 bp
Sequences
Splice sites
5' ss Seq
CCCGTGAGT
5' ss Score
8.4
3' ss Seq
ACCCTCTACCCTTTTGCCAGGGC
3' ss Score
7.26
Exon sequences
Seq C1 exon
AGGCCCAAGGCAGAGGTGGCTGCAGAGGCAGCCCATCGCCTAAACCCAGACCTGCAAGTGACTTCACATACCTGCCCTCTGGATCCCACCACAGAGGACATCTATGACGACGACTTCTTCTCCAGGGTGGACGGCGTTGTTGCTGCTTTGGACAGTTTCCAGGCCC
Seq A exon
GTGAGTCCCTCACTGAGAGCCAAGTCCCTTGCCCAAGGCTCTGGCAGCCTCACCCCATACCCTCTACCCTTTTGCCAG
Seq C2 exon
GGCACTATGTTGCTGCTCGATGCACCCACTATTTGAAACCACTGCTGGAGGCAGGCACCCAGGGAACCCGGGGGAGTGCTTCAGTGTTTGTGCCATATGTGACAGAAGTCTACAAAGGTCCTACCTCAGCCGAGGAAGCTCCCTACCCTGTGTGCACCCTGCGGCATTTTCCCAGCACTGTGGAGCACAGCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(37.9=100)
A:
NA
C2:
PF0089916=ThiF=PD(20.7=45.5),PF105854=UBA_e1_thiolCys=PU(73.3=50.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATCCCACCACAGAGGACAT
R:
TGGCACAAACACTGAAGCACT
Band lengths:
181-259
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]