BtaINT0155998 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012335 | UBA7
Description
Bos taurus ubiquitin-like modifier activating enzyme 7 (UBA7), mRNA. [Source:RefSeq mRNA;Acc:NM_001012284]
Coordinates
chr22:50992646-50993161:+
Coord C1 exon
chr22:50992646-50992752
Coord A exon
chr22:50992753-50993070
Coord C2 exon
chr22:50993071-50993161
Length
318 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGA
5' ss Score
4.74
3' ss Seq
CCCCTGCCACCCCGCCACAGGCA
3' ss Score
7.5
Exon sequences
Seq C1 exon
GTGGTGGTGCTGACCGCCTCGAGGCTGGAGGAGCAGCTGAGAGTGGGCACCTTGTGCCACGAGCATGGAGTCTGCTTCCTGGTGGCAGACACCCGAGGCCTTGTGGG
Seq A exon
GTGAGATGGCTCGCCCAGCCTGCCACATCACAGGCAGCGAGTGATCCCAGTTCCAGGCTTGCTCCAGAGCTCCTCCACCCAACCCCAGGGCTGTTCCCCACTTTCCCTTCTTGATCACAGTCCCCAGTCCCATTCGTCTGCTTCCTCTACCTCAGCCTCCAGACTTGTTCAGTACATCTTTCAAACTCCAGTTTCCAAGCCTCTCCCAGCACTTTTTCCCCAATTCCTCAGGGCTTGCCCTAGTGCCTGTTGCCCTTCACCACAACCGTGGCGGTTAAACACTGAGTCAGCTCAGTGACCCCTGCCACCCCGCCACAG
Seq C2 exon
GCAGTTGTTCTGTGACTTTGGTGAGAACTTCACTGTGCAGGACCCCACAGAGGCAGAACCCCTGACGGCCAACATCCAGCATATCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012335:ENSBTAT00000016365:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCTGACCGCCTCGAGG
R:
GGGAGATATGCTGGATGTTGGC
Band lengths:
190-508
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]