RnoINT0159038 @ rn6
Intron Retention
Gene
ENSRNOG00000029195 | Uba7
Description
ubiquitin-like modifier activating enzyme 7 [Source:RGD Symbol;Acc:1308323]
Coordinates
chr8:116754955-116755459:+
Coord C1 exon
chr8:116754955-116755061
Coord A exon
chr8:116755062-116755368
Coord C2 exon
chr8:116755369-116755459
Length
307 bp
Sequences
Splice sites
5' ss Seq
GGGGTAAGG
5' ss Score
8.05
3' ss Seq
ACTTCTGCCAACCATACTAGGCG
3' ss Score
6
Exon sequences
Seq C1 exon
GTAGTGGTGCTGACTGACTCCAAGCTAGAGGACCAGCTGAATATGGGAGCCTTGTGCCATAAGAATAGAGTCTACTTCCTCATGGCTGAAACCCGGGGCCTTGTGGG
Seq A exon
GTAAGGAGACTCCCTATATACCCCACCACGTCACTGCCAACAATTGTTCCCAATGCTTTGCCCAGCCCTAAGCTTGGCCCTATCCTTACCCACTCATCCTCAAGCCTAGCCAAGGATCCTCTTAATTCTAGACTACAATCTCACCCTTGTTTCTCCACCTCGGTATGCAGATCTGCTCTAGTACACCCTACATGCCCAAATCAAAATCTCCACGTCTTTTCTATAATTTCTTTCCCTCTGGGCCTGTCCTAGTGTCCCCTACTCACAACTGATGAGCTTCCTCAGTAACTTCTGCCAACCATACTAG
Seq C2 exon
GCGGTTATTCTGTGATTTTGGTGAGGACTTCACTGTTGTGGACCCTACAGAGGTGGAGCCCACGTCAGCTGCCATCCAGGACATCTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000029195:ENSRNOT00000068295:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGGTGCTGACTGACTCC
R:
CTGAGAGATGTCCTGGATGGC
Band lengths:
198-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]