GgaINT0022366 @ galGal4
Intron Retention
Gene
ENSGALG00000002521 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:HGNC:12471]
Coordinates
chr12:2433421-2433743:-
Coord C1 exon
chr12:2433637-2433743
Coord A exon
chr12:2433512-2433636
Coord C2 exon
chr12:2433421-2433511
Length
125 bp
Sequences
Splice sites
5' ss Seq
AGGGTAAGG
5' ss Score
9.16
3' ss Seq
GCTGCGTTGTCCCTGCCCAGGCA
3' ss Score
6.52
Exon sequences
Seq C1 exon
GTGGTGCTGCTGACCGAGTCCCCGCTGGAGGAGCAACTCCGTATCGGGGACATCTGCCATGCCAAGGGTATCTGCTTCATCGTGGCCGATGCCAAAGGGCTGGCAGG
Seq A exon
GTAAGGGCTTAGCACCGCGTGGCACCGGGCGGCTGCCCCTTCTCACCCTGCCCCGTCCCCCCGTGTCCCCATCCCACCGGTGGGTGGGACCTGGCCACTCTCAGGGCTGCGTTGTCCCTGCCCAG
Seq C2 exon
GCAGCTCTTCTGTGACTTCGGGGAGCACTTTGTTGTCCGTGACCCGGTGGAAGGGGACCCGCTCTGTGCCACCGTGCAGCACGTCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002521:ENSGALT00000003973:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(27.1=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.7=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGCTGCTGACCGAGTC
R:
CTGGGAGACGTGCTGCAC
Band lengths:
197-322
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]