DreINT0170313 @ danRer10
Intron Retention
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20724390-20724673:+
Coord C1 exon
chr23:20724390-20724496
Coord A exon
chr23:20724497-20724582
Coord C2 exon
chr23:20724583-20724673
Length
86 bp
Sequences
Splice sites
5' ss Seq
TGGGTATGA
5' ss Score
5.85
3' ss Seq
AACATTCTGTTATTTAATAGGCA
3' ss Score
7.68
Exon sequences
Seq C1 exon
GTTGTTGTGCTCACCAACTCTAGTCTTGATGAACAGACACGTATCGGGGAATTTTGCCACAGTAATGGCATCAAGTTGATTGTGGCAGACACACGTGGACTGTTTGG
Seq A exon
GTATGAATATTTAAAAGATATGACATTTTTTAAGGTTTTTTTTTTCCTCCATGTAACTTTTTCATAAACATTCTGTTATTTAATAG
Seq C2 exon
GCAACTGTTCTGTGATTTTGGGGAGGAAATGATAGTATTCGACACAAACGGAGAACAGCCATTGAGCGCCATGATCTCAATGATCACAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559:ENSDART00000054691:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0089916=ThiF=PD(26.6=91.7)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTGTTGTGCTCACCAACTCT
R:
TGGCTGTTCTCCGTTTGTGTC
Band lengths:
168-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]