MmuINT0168786 @ mm10
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20670204-20670634:+
Coord C1 exon
chrX:20670204-20670310
Coord A exon
chrX:20670311-20670543
Coord C2 exon
chrX:20670544-20670634
Length
233 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTGCCACTCTCTCTCTACAGGCA
3' ss Score
12.53
Exon sequences
Seq C1 exon
GTGGTGGTCCTCACCAACAGCCCCCTGGAAGCCCAGCTGCGAGTGGGGGAGTTCTGTCATAGCCGTGGTATCAAGCTAGTGGTGGCAGATACAAGAGGCCTGTTTGG
Seq A exon
GTGAGTGCCACTCCTGCATGCCTTTTCCCACAACCTTTCCTAGGCCAAGATCCTCATCCCTCTTCTACAACCCACGTTTCATATTGTGTGTGCTCACCTCTCCTCGTGTGACATTAGTGCTGCTGTGTCCTCTCTGTGATGTGCCAAGTTTGCTCAGCACACACACCTTGAAAGATGCCTTGGGCCTTGTGTGGGCCTCAGGCATCAGTCTTCTTGCCACTCTCTCTCTACAG
Seq C2 exon
GCAACTTTTCTGTGATTTTGGAGAGGAAATGGTCCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCAATGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924:ENSMUST00000089217:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCACCAACAGCCCCC
R:
TGGTGACCATTGAAACCATAGCA
Band lengths:
189-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types