MmuINT0168786 @ mm9
Intron Retention
Gene
ENSMUSG00000001924 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
Coordinates
chrX:20247330-20247760:+
Coord C1 exon
chrX:20247330-20247436
Coord A exon
chrX:20247437-20247669
Coord C2 exon
chrX:20247670-20247760
Length
233 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
TTGCCACTCTCTCTCTACAGGCA
3' ss Score
12.53
Exon sequences
Seq C1 exon
GTGGTGGTCCTCACCAACAGCCCCCTGGAAGCCCAGCTGCGAGTGGGGGAGTTCTGTCATAGCCGTGGTATCAAGCTAGTGGTGGCAGATACAAGAGGCCTGTTTGG
Seq A exon
GTGAGTGCCACTCCTGCATGCCTTTTCCCACAACCTTTCCTAGGCCAAGATCCTCATCCCTCTTCTACAACCCACGTTTCATATTGTGTGTGCTCACCTCTCCTCGTGTGACATTAGTGCTGCTGTGTCCTCTCTGTGATGTGCCAAGTTTGCTCAGCACACACACCTTGAAAGATGCCTTGGGCCTTGTGTGGGCCTCAGGCATCAGTCTTCTTGCCACTCTCTCTCTACAG
Seq C2 exon
GCAACTTTTCTGTGATTTTGGAGAGGAAATGGTCCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCAATGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000001924-Uba1:NM_001136085:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCACCAACAGCCCCC
R:
TGGTGACCATTGAAACCATAGCA
Band lengths:
189-422
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: