BtaINT0155897 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016764 | UBA1
Description
Bos taurus ubiquitin-like modifier activating enzyme 1 (UBA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001102477]
Coordinates
chrX:90837938-90838395:+
Coord C1 exon
chrX:90837938-90838044
Coord A exon
chrX:90838045-90838304
Coord C2 exon
chrX:90838305-90838395
Length
260 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
3' ss Seq
CCTGTTGCCTCCCTCTACAGGCA
3' ss Score
11.45
Exon sequences
Seq C1 exon
GTGGTGGTCCTCACTAACAGCCCCCTGGAGGACCAGCTGCGGGTAGGTGAGTTCTGTCACAGCCATGGCATCAAGCTGGTGGTGGCAGACACCCGGGGCCTGTTCGG
Seq A exon
GTGAGTGCCCCTGCTCTTTTCCACCCTGACCCCTGCCTTGTCCAAGAAAAAACCCCCAAGCTCTGACTGCCCTCAGCCCCCCTTAGGCCTTTGGGTTTTGGATGCTGCGTGTTTACCTTGCCTCACGTAGCATGAGCACAGTCTGATTCCCAGCAGTGATGGGCTGATTTGCTCAGCAAATACTCACTGCATCTTGAGGGACACGTGCAGTCTCAATGTGCGTGGGACTTGGGCATCAGCCCTGTTGCCTCCCTCTACAG
Seq C2 exon
GCAGCTCTTCTGTGATTTTGGAGAGGAAATGATCCTCACTGATTCCAATGGGGAGCAGCCGCTCAGTGCTATGGTTTCTATGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016764:ENSBTAT00000022299:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTCCTCACTAACAGC
R:
TGGTGACCATAGAAACCATAGCAC
Band lengths:
196-456
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]