RnoINT0158939 @ rn6
Intron Retention
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1734867-1735302:-
Coord C1 exon
chrX:1735196-1735302
Coord A exon
chrX:1734958-1735195
Coord C2 exon
chrX:1734867-1734957
Length
238 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
3' ss Seq
CCTCTTGTCCCTTTCTATAGGCA
3' ss Score
10.57
Exon sequences
Seq C1 exon
GTGGTGGTCCTTACCAACAGCCCCCTGGAAGAACAGCTTCGAGTGGGTGAGTTCTGTCATAGCCGTGGCATCAAGCTAGTGGTGGCAGATACAAGAGGCCTATTTGG
Seq A exon
GTGAGTACCACTTCTGCATGCCTTTTTTTCCCCACGTCCTTTCCTTGGCCAAGACCCTTATCCCTCTTCTACAACCTACATTTCATATTGTGTATCTTCATCTCTCCCTGCATGACATTAGTGCTGTTGTATCCCCTGTTATGTACCAAGTTGGTTCAGCACACATCCAATGTACCTTGAAAGATGCCTTGGGCCTTGTGTGGGCCTCAGACATCAGTCCTCTTGTCCCTTTCTATAG
Seq C2 exon
GCAACTTTTCTGTGATTTTGGAGAGGAAATGGTTCTCACAGATTCCAATGGGGAGCAGCCACTCAGTGCTATGGTTTCAATGGTCACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164:ENSRNOT00000031115:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.065
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTTACCAACAGCCCCCTG
R:
TGGTGACCATTGAAACCATAGCA
Band lengths:
189-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]