HsaINT0176118 @ hg19
Intron Retention
Gene
ENSG00000182179 | UBA7
Description
ubiquitin-like modifier activating enzyme 7 [Source:HGNC Symbol;Acc:12471]
Coordinates
chr3:49850081-49850601:-
Coord C1 exon
chr3:49850495-49850601
Coord A exon
chr3:49850172-49850494
Coord C2 exon
chr3:49850081-49850171
Length
323 bp
Sequences
Splice sites
5' ss Seq
GGGGTGAGT
5' ss Score
7.93
3' ss Seq
CCCCTACCACCCCATCTCAGGCA
3' ss Score
6.26
Exon sequences
Seq C1 exon
GTGGTGGTGCTGACTGCTGCAAAGCTGGAGGAGCAGCTGAAGGTGGGCACCTTGTGTCATAAGCATGGAGTTTGCTTTCTGGCGGCTGACACCCGGGGCCTCGTGGG
Seq A exon
GTGAGTAAGACTGCCTGCCCAGCCTACCATATTACAGCCAGCAACTGGCCTCATGCTGTCCTCAGCTCCAGGCTTGCTCCAGTGCCCCTCCAACCAGCCTCAGGTCTATCCCAGCATGCCTTTCTGATTCTGGTCCCCAGTCCTGCCCTCTGGTTCCTCCAACCTAGCCTCCAGACCTGCTCCAGTAACCCTCTCAAATTCTAGTTCCCAAGCCTCTCCTTGCATTCCTTTCCCAATTCTGGCCCTCTGGCCCTGCCCTAGTATCCCCTATCCTTAAGTACAATCTGTAAGCCACCTCAGTGACCCCTACCACCCCATCTCAG
Seq C2 exon
GCAGTTGTTCTGTGACTTTGGTGAGGACTTCACTGTGCAGGACCCCACAGAGGCAGAACCCCTGACAGCTGCCATCCAGCACATCTCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000182179-UBA7:NM_003335:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.194
Domain overlap (PFAM):
C1:
PF0089916=ThiF=FE(26.5=100)
A:
NA
C2:
PF0089916=ThiF=PD(4.5=19.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGGTGCTGACTGCTG
R:
CTGGGAGATGTGCTGGATGG
Band lengths:
198-521
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)