BtaINT0156220 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007515 | UBE2Q1
Description
Bos taurus ubiquitin-conjugating enzyme E2Q family member 1 (UBE2Q1), mRNA. [Source:RefSeq mRNA;Acc:NM_001206320]
Coordinates
chr3:16087397-16088325:+
Coord C1 exon
chr3:16087397-16087463
Coord A exon
chr3:16087464-16087916
Coord C2 exon
chr3:16087917-16088325
Length
453 bp
Sequences
Splice sites
5' ss Seq
ATGGTGAGG
5' ss Score
7.61
3' ss Seq
TTTCTTCCATTGCTTTGCAGGCT
3' ss Score
10.42
Exon sequences
Seq C1 exon
TCTCAATACAGCCTGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAATG
Seq A exon
GTGAGGCTGGAGCCACGACTTGAGATTCGGACCTTTGCCAAGCCCGAGGTTTCCATCCGGCTAAACAGCAAGAACCCCTTTCAGTTTCTGAGCCTTTTCCACCTGTTAGCGCAGCACCTGTCCCTGTTGCCCAGGGAATTCAGTGAGGTGTGGAGGGTAGCGTGCGCCACTCTCCTCCAGTTAAGCCAGTGGCGGTCAGAGCACAGGTAGACTGAGCACCGCCCCACTGCCCACTGCCCACTGGTGTCATCTCAGGGTCGGTGCATCATTCTCCCTTTCCTTACAATTTCCAAGTAGGCAGTTCCTCACCTGCCCATATAGCTTCTCTCCCTGCACCAGGAAGCCCTTTTCAGGATCTTTTCACCTTTGACCCTGGAGACGTCTTCAGTGATTAGGGCTAGGAGGGTGGGCAGAACAGCCTCCACCTGACCGTTTTCTTCCATTGCTTTGCAG
Seq C2 exon
GCTGGTACACACCCCCGAAGGAAGATGGCTAACCCAGGAGTGCCATCCCCTTCCTCCTTCCCCAGGCACCACTGGACCAATTACCTTTGAATGCTGTATTTGGATCTCACGCTGCCTCTGTGGTTCCCTCCCTCATTTTTCCTGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTCTAAACGCTAAGGAAAAAAAAAAAACAAACACACACAGAACTGTTTCAAGTACTCAAGACTGACTTACAGACCAACCAACCACCTGGCTGGAACCCTTGCTAGCAGGCATTCTTATAAAAGAAACTTTCGAGCCTCCTTATATTGCTGGAAACTCAGCTGTGCTCCAGACTAGAGCCTCCTTACCTATGCTATGGATTTTTAATTTATTTTCTCTTATTTCATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007515:ENSBTAT00000009889:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(18.8=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGACAAGAGCACAGCAGTCC
R:
CTGCTAGCAAGGGTTCCAGC
Band lengths:
346-799
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]