MmuINT0169149 @ mm9
Intron Retention
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q (putative) 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89585693-89587919:+
Coord C1 exon
chr3:89585693-89585759
Coord A exon
chr3:89585760-89586178
Coord C2 exon
chr3:89586179-89587919
Length
419 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TTGTCTGTCTGTTTGTGCAGGCT
3' ss Score
9.12
Exon sequences
Seq C1 exon
TCTCAGTATAGCCTGACGAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCATGAAAAAAACG
Seq A exon
GTGAGGCTGGCCCCAGGCCAGGCCAGGCCCCGCTCTAGTCAAGTGCAGAGGCCTTCGTGGTTTCTGAGCCTTACTGTCTCCTGGTCCATTGTCTGCCCAGTTCTCCAGAAGTCTGGAGTACTGTCCCTCTTCTTCCCAAGAAGTAACCAGTAGTGGGGTTTCTGGTAGCCTGGGCACTGTCCTCTGCGTTACCCTCTGCAAAGCCCATCCAGTTCCTGCCCTAGGTGGGCTCACCATTCTCCCTCCCTTACAGTACCCTCCGGGTAAGCCGCCTCCGCTCCCCTACACAGTAGCCTTCCTAGCATATGCTTTCCTGGAACATGGAGGTGTCCTCAGGGATTGATTGGGGCAGGTGAAGTTGGCCTGGGCCTCCCCTCACTATGCTGGTTTGTGTTTTGTTTGTCTGTCTGTTTGTGCAG
Seq C2 exon
GCTGGTACACACCCCCAAAGGAAGATGGCTAGCCCTGGAGTCTCACCCTTCCTCCTCCCCAGGCACCACTGGACCAATTACCTTTGAATGCTGTGTTTGGATCTCACGCTGCCTCTGGTTTCCCCCCCTCATTTTTCCTGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTCTAAACGCTAAGGAAAAACAACAACCCACAACACACACTGAACTGTCTCAAGTACTCAAGACTGACTACAGACCAACCACCTCGCTGGAACCCTTGCTAGCAGGCATTCTTATAAAGAAACTCTCAAGCCTCCTTATATTGCTGGAAACTCAGCTGTGCTCCAGACTAGAGCCTCCTTACCTATGCTATGGGTTTTTAATTTATTTTCTCTTATTTCATGTACACTGCTTTTTTTGGTTACAGTGTATGATGGATGTGTATGAAAAAATGTATCTTTGGGAAAACAATTACAGTTTGTTAATTTGAAGATGCTGGTCTTGACTCATCTTTATTTTTATTCCCACATCCCCTGACTGCTGGGTGGGGGGAGGGGTGCCAGGCCCACCATGCTTTGGTAGCAAGGAGAAGCTGCAGAGAGGCTGCAATTCGATGCTAGCACAAGAGAAAGGCCAAGCGGAAGCACTCGCCTGATCTGACCCTAGATTTCTCCCGAAGGCCTCTGGAGCAACCAGTACCTAAACTCTTTGGAACAGTCTGGCTTGCTGAACTACAGTGCAGAGGCCCAGAAACATCCTGATTATTAGTACCTCTTTGTACTAATCTCCATTTTTGAAATTTCCAAGAAAAAGATGAGACTTGAGTAGCTGCTTCATGAACTCCTTTTAAGTTGAGTGGGGTGGTGCCCTGGCTCCTGGATGCATGAGGTTTCCTCTAATCCCAAGCAACCTGCTGAGCGGCTGTAACTCACTGGTTCCCTGCCTTCCTGTCCTCTCTTCTCACCTCTCATCTGCTTTATTAGATTATCTAAGAAAAGACTTGAACTTTGGATTCTTTCTAGCCATTCCCAAGTTGTGGGTCTACTGGAAACAGTAGCTCAATGTGGTTGCATTGTGTAGTGGGACCTCGGCTCAGCTCCAGGAACTGCACAGCCGGGGAGAAGTCTGCAGAGCCACAGCTACCAGTGTTGGACCTGCTGTTGTGAGACTGCACGCAGTACATGGAGCCTGCATCTCCCTCTTTGAGCTTGCTGTGGGACCACCTGCCTGCAGACTGGAGGAAGACTGAAGTGACAGAGGCAAGGGACAGCCAAGCCAAGTCCTGGAGCTTAGGAAACCCAGCCCTGGAACAGTTGCCTGGATGTTTGCTAATGCTTCTGAGATGGGCATTCGAGTTTGGCCATCTTCCCCCACTCCCCATCTCTTCTAGGGATTTGAATGTCTTGCTGCTTTAGGGGGATGGAGAGTTCACCAGTCCTACTTGATGCTGCTCTAATTCTGCCTACACCCACCAGGTTAGGGGTGCTAATACATGGTGAGGTTGAGACACAGAGGATACAAGGGGAATAAGTCATTCCATAGAACTGAAATCTATCTCATAGCCTGTAAGGCTTCCTTCTGAACTTAACACCAGCCAGGGCTGGCATGTAGATTGTGTTTTTAGTAACGTGTACTGTGAGCTGTCCTCTGTATAATGTATTTTGTAATGTATTTTTCTCATCTACCAAAGGATGAATCAAATAAAGTTATTTAAATAGTTTGGCTCTAATAAACTTATTTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572-Ube2q1:NM_027315:12
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(18.8=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCCTGACGAGAGCACAGC
R:
CTGCTAGCAAGGGTTCCAGC
Band lengths:
344-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: