DreINT0170674 @ danRer10
Intron Retention
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50604424-50605426:-
Coord C1 exon
chr18:50605360-50605426
Coord A exon
chr18:50605146-50605359
Coord C2 exon
chr18:50604424-50605145
Length
214 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGA
5' ss Score
8.94
3' ss Seq
TGTGTGTGTTATTTCTCCAGGCT
3' ss Score
9.91
Exon sequences
Seq C1 exon
AATCAGTACAATCTTGCCAGAGCACAGCAGTCGTATAAATCTCTGGTGCAAATCCACGAAAAGAACG
Seq A exon
GTGAGAAAACAAATCATTGATGTATTGATGTCTGGAAATGGAGAATCTGACTTTAATTTCACACATCGCCAGGGTTATAATCAGACAATAGCAGATTTTCGTTGTTTTATTTTCAGTTTTTTTTTTCATTTTAGTATTTAATTTTTACCTTTAGGTTCAGTTGTCCAGCATTGATTTGAAAGTGTGTGTGTGTGTGTGTGTGTTATTTCTCCAG
Seq C2 exon
GCTGGTACACACCACCGAAAGAAGACGGCTAAATGTGGAGATGGACAGAGTTTCTCCTCTGCTTTCTCTCTTCTTCTTCTGTCTCCGTCATCCCTTCATCAGCTCTGCAGAGATCCACCATGTTTCCACACACACCAGATCCAGTGACATCTGACCGCTTCTGTACATTCCTGAGTCCTGAACACACACACACACACACATATAGAGTTGCACTGAACTGCAGGAGTGTGTGGATGAACATCTCTGATGATAGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTCTGGGATCTGCGAGGAGACCCATAATGCCTTAAAGAGCAGGATTGTGACTGATCTGAGAGCAGCTCTTGTTCCTATGTTCTCCTTCACCCGTCAGCGTCTCCTGAACCCTATGCAGTGCACTTGTTAGGGCTGATCTGTGTTCTTCAGACAGGAGCTGTTATTCCTTCTTGACGTTTGGACTTCAGAGATGAAGCGTACTCAAGCCGCTCTGCTGTGCTTCTGAATGGGAACACTGTGTGTGTGTGTGTGTTAAAGGCTGACTCCAGATCAGTTCCTCACTCAGACGTTCACTCCTCTGCTGTGGTTCATCTGTCGGCATGCTTCACCTTTACTGCAGTTCCGTTTCCTCTTGTTCGGTGTCATTTTGACAGACATGTACAGAACCGTTTGTAAACTTGCATCAAGTTTATGAATAAAGAATTTTAAGAAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766:ENSDART00000159481:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(18.8=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCTGGTGCAAATCCACGAA
R:
ACACACACACACACACACACA
Band lengths:
306-520
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]