RnoINT0159278 @ rn6
Intron Retention
Gene
ENSRNOG00000020791 | Ube2q1
Description
ubiquitin conjugating enzyme E2 Q1 [Source:RGD Symbol;Acc:1305305]
Coordinates
chr2:189114166-189115108:+
Coord C1 exon
chr2:189114166-189114232
Coord A exon
chr2:189114233-189114628
Coord C2 exon
chr2:189114629-189115108
Length
396 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TTTTCTTTGTTTTTGTGCAGGCT
3' ss Score
10.07
Exon sequences
Seq C1 exon
TCTCAGTATAGTCTGACAAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCACGAAAAAAACG
Seq A exon
GTGAGGCTGGGGCCCCCAGGCCCAGGTCCCACTCTAGTCAAGTCCAGGGACCTCTTTGGTTTCTGAGCTTACTGTCCACTTGTCCATCATCTGCCCAGTTCTTCAGAACTCTGTAGTATTGTCACCCTTCTTCCCAGCAGTGGGGTTGAAGGTAGCCTGGGCCCTGCCCTCTGCTGTCACTCTGCAAAGCTCATCCAGTTCCTGTCCTGAGTGGGCTCCCCATTCTCCCTCCCTTATAGTAACTCTGGGTAAGCAGCCTCAGCTCCCCTACTTGACATCCTTCCTAGGATCTGCTTTCCTGGAACATGGAGTGTCCTCAGGGATTGCAATAGGTGAAGTTGGCCTGGGCCTGCCCCTCACTATGCTGGTTTGTGGTTTTTCTTTGTTTTTGTGCAG
Seq C2 exon
GCTGGTACACACCCCCGAAGGAAGATGGCTAACCCTGGAGTATCATCCCCTTCCTCCTCCCCAGGCACCACTGGACCAATTACCTTTGAATGCTGTATTTGGATCTCACGCTGCCTCTGGTTCCCCTCATTTTTCCTGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTCTAAACGCTAAGGAAAACCAACCACCCACAACACTGAACTGTCTCAAGTACTCAAGACTGACTACAGACCAACCACCTCGCTGGAACCCTTGCTAGCAGGCATTCTTATAAAGAAACTCTCAAGCCTCCTTATATTGCTGGAAACTCAGCTGTGCTCCAGACTAGAGCCTCCTTACCTATGCTATGGGTTTTAATTTATTTTCTCTTATTTCATGTACACTGCTCTTTTTGGTTACAGTGTATGATGGATGTGTATGAAAAAAATGTATCTTTGGGAAAACAATTACAGTTTGTTAATTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020791:ENSRNOT00000028210:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(18.8=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTGGTGCAGATCCACGAAA
R:
TCCAGCAATATAAGGAGGCTTGA
Band lengths:
348-744
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]