MmuINT0169149 @ mm10
Intron Retention
Gene
ENSMUSG00000042572 | Ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:MGI Symbol;Acc:MGI:1917343]
Coordinates
chr3:89781771-89784000:+
Coord C1 exon
chr3:89781771-89781837
Coord A exon
chr3:89781838-89782256
Coord C2 exon
chr3:89782257-89784000
Length
419 bp
Sequences
Splice sites
5' ss Seq
ACGGTGAGG
5' ss Score
9.2
3' ss Seq
TTGTCTGTCTGTTTGTGCAGGCT
3' ss Score
9.12
Exon sequences
Seq C1 exon
TCTCAGTATAGCCTGACGAGAGCACAGCAGTCCTACAAGTCCTTGGTGCAGATCCATGAAAAAAACG
Seq A exon
GTGAGGCTGGCCCCAGGCCAGGCCAGGCCCCGCTCTAGTCAAGTGCAGAGGCCTTCGTGGTTTCTGAGCCTTACTGTCTCCTGGTCCATTGTCTGCCCAGTTCTCCAGAAGTCTGGAGTACTGTCCCTCTTCTTCCCAAGAAGTAACCAGTAGTGGGGTTTCTGGTAGCCTGGGCACTGTCCTCTGCGTTACCCTCTGCAAAGCCCATCCAGTTCCTGCCCTAGGTGGGCTCACCATTCTCCCTCCCTTACAGTACCCTCCGGGTAAGCCGCCTCCGCTCCCCTACACAGTAGCCTTCCTAGCATATGCTTTCCTGGAACATGGAGGTGTCCTCAGGGATTGATTGGGGCAGGTGAAGTTGGCCTGGGCCTCCCCTCACTATGCTGGTTTGTGTTTTGTTTGTCTGTCTGTTTGTGCAG
Seq C2 exon
GCTGGTACACACCCCCAAAGGAAGATGGCTAGCCCTGGAGTCTCACCCTTCCTCCTCCCCAGGCACCACTGGACCAATTACCTTTGAATGCTGTGTTTGGATCTCACGCTGCCTCTGGTTTCCCCCCCTCATTTTTCCTGGACGTGATAGCTCTGCCTATTGCAGGACAATGATGGCTATTCTAAACGCTAAGGAAAAACAACAACCCACAACACACACTGAACTGTCTCAAGTACTCAAGACTGACTACAGACCAACCACCTCGCTGGAACCCTTGCTAGCAGGCATTCTTATAAAGAAACTCTCAAGCCTCCTTATATTGCTGGAAACTCAGCTGTGCTCCAGACTAGAGCCTCCTTACCTATGCTATGGGTTTTTAATTTATTTTCTCTTATTTCATGTACACTGCTTTTTTTGGTTACAGTGTATGATGGATGTGTATGAAAAAATGTATCTTTGGGAAAACAATTACAGTTTGTTAATTTGAAGATGCTGGTCTTGACTCATCTTTATTTTTATTCCCACATCCCCTGACTGCTGGGTGGGGGGAGGGGTGCCAGGCCCACCATGCTTTGGTAGCAAGGAGAAGCTGCAGAGAGGCTGCAATTCGATGCTAGCACAAGAGAAAGGCCAAGCGGAAGCACTCGCCTGATCTGACCCTAGATTTCTCCCGAAGGCCTCTGGAGCAACCAGTACCTAAACTCTTTGGAACAGTCTGGCTTGCTGAACTACAGTGCAGAGGCCCAGAAACATCCTGATTATTAGTACCTCTTTGTACTAATCTCCATTTTTGAAATTTCCAAGAAAAAGATGAGACTTGAGTAGCTGCTTCATGAACTCCTTTTAAGTTGAGTGGGGTGGTGCCCTGGCTCCTGGATGCATGAGGTTTCCTCTAATCCCAAGCAACCTGCTGAGCGGCTGTAACTCACTGGTTCCCTGCCTTCCTGTCCTCTCTTCTCACCTCTCATCTGCTTTATTAGATTATCTAAGAAAAGACTTGAACTTTGGATTCTTTCTAGCCATTCCCAAGTTGTGGGTCTACTGGAAACAGTAGCTCAATGTGGTTGCATTGTGTAGTGGGACCTCGGCTCAGCTCCAGGAACTGCACAGCCGGGGAGAAGTCTGCAGAGCCACAGCTACCAGTGTTGGACCTGCTGTTGTGAGACTGCACGCAGTACATGGAGCCTGCATCTCCCTCTTTGAGCTTGCTGTGGGACCACCTGCCTGCAGACTGGAGGAAGACTGAAGTGACAGAGGCAAGGGACAGCCAAGCCAAGTCCTGGAGCTTAGGAAACCCAGCCCTGGAACAGTTGCCTGGATGTTTGCTAATGCTTCTGAGATGGGCATTCGAGTTTGGCCATCTTCCCCCACTCCCCATCTCTTCTAGGGATTTGAATGTCTTGCTGCTTTAGGGGGATGGAGAGTTCACCAGTCCTACTTGATGCTGCTCTAATTCTGCCTACACCCACCAGGTTAGGGGTGCTAATACATGGTGAGGTTGAGACACAGAGGATACAAGGGGAATAAGTCATTCCATAGAACTGAAATCTATCTCATAGCCTGTAAGGCTTCCTTCTGAACTTAACACCAGCCAGGGCTGGCATGTAGATTGTGTTTTTAGTAACGTGTACTGTGAGCTGTCCTCTGTATAATGTATTTTGTAATGTATTTTTCTCATCTACCAAAGGATGAATCAAATAAAGTTATTTAAATAGTTTGGCTCTAATAAACTTATTTAAAGAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042572:ENSMUST00000038356:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.600
Domain overlap (PFAM):
C1:
PF0017921=UQ_con=PD(18.8=82.6)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGCCTGACGAGAGCACAGC
R:
CTGCTAGCAAGGGTTCCAGC
Band lengths:
344-763
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types