BtaINT0157546 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39683645-39684107:+
Coord C1 exon
chr7:39683645-39683748
Coord A exon
chr7:39683749-39683926
Coord C2 exon
chr7:39683927-39684107
Length
178 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GGCATGGCTCCCTCCCCCAGGTG
3' ss Score
9.33
Exon sequences
Seq C1 exon
ATTTGCGGAAGAACTTTGAGCAGGAACCATTGGCCAAGGAGGTGTCGCTGGAGCAGGGCATCGTGCTGCCCTGCCGCCCACCGGAGGGCATCCCCCCAGCCGAG
Seq A exon
GTGAGCGGGGCTGCAGTGCCACTCCAGGTGGGCAGTACCACTCCAGGTGGGCAGTGCTCCCAGGTCTCAGCCTGCCCTGCCCAGCCCTCCAGGCTGATCCCCCCCACCCAGGGGCCACGCTCGCTCCAGGCAGGGCCAGCACAGTCAGGCGGTGCAGTGGCATGGCTCCCTCCCCCAG
Seq C2 exon
GTGGAGTGGCTCCGGAACGAGGACCTTGTGGACCCATCCATGGACCCCAATGTGTACATCACGCGGGAGCACAGTCTGGTGGTGCGACAGGCCCGCCTGGCTGACACGGCCAACTACACCTGCGTGGCCAAGAACATCGTGGCTCGTCGCCGCAGCGCCTCCGCTGCTGTCATCGTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897:ENSBTAT00000043831:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(34.1=88.6)
A:
NA
C2:
PF0767911=I-set=PD(63.7=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAAGAACTTTGAGCAGGA
R:
GACGAGCCACGATGTTCTTGG
Band lengths:
248-426
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]