RnoINT0160592 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10162360-10162770:-
Coord C1 exon
chr17:10162667-10162770
Coord A exon
chr17:10162541-10162666
Coord C2 exon
chr17:10162360-10162540
Length
126 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
GTCATGGCTTCTCCCCCTAGGTG
3' ss Score
11.47
Exon sequences
Seq C1 exon
ATTTGCGCAAGAACTTTGAGCAGGAGCCACTGGCCAAGGAAGTGTCACTGGAGCAAGGCATTGTACTACCTTGTCGCCCCCCAGAAGGAATCCCCCCAGCTGAG
Seq A exon
GTGAGTAGGGGTACCGGGTTCCCAGACCTCTGCTCCTACCTAAAGCTCAGACTCCTGGCTTCCCCCTCCCCAGTGCTCACTCTGTACCCTGGTCAGGCCAGCATGGGTCATGGCTTCTCCCCCTAG
Seq C2 exon
GTGGAGTGGCTTCGAAATGAGGACCTCGTGGACCCCTCCCTCGATCCCAATGTGTACATCACGCGGGAGCACAGCCTAGTCGTGCGTCAGGCCCGCCTGGCCGACACGGCCAACTACACCTGTGTGGCCAAGAACATCGTAGCCCGTCGCCGAAGCACCTCTGCAGCGGTCATTGTTTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(34.1=88.6)
A:
NA
C2:
PF0767911=I-set=PD(63.7=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGTCACTGGAGCAAGG
R:
AAACAATGACCGCTGCAGAGG
Band lengths:
245-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]