HsaINT0177854 @ hg19
Intron Retention
Gene
ENSG00000113763 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:12567]
Coordinates
chr5:176295562-176295965:+
Coord C1 exon
chr5:176295562-176295665
Coord A exon
chr5:176295666-176295784
Coord C2 exon
chr5:176295785-176295965
Length
119 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GGCAGGGCTCCCTCCCCTAGGTG
3' ss Score
7.95
Exon sequences
Seq C1 exon
ATTTGCGCAAGAACTTCGAGCAGGAGCCGCTGGCCAAGGAGGTGTCCCTGGAGCAGGGCATCGTGCTGCCCTGCCGTCCACCGGAGGGCATCCCTCCAGCCGAG
Seq A exon
GTGAGGGCTCCTCTAGTGCCCACGTCTGGACCTGGGCTCCTGCCTGGTCACCCTGGCAGGGGCCACTCTGGGCAGGGCCAGCATGGGCTGGCAGTACATGGCAGGGCTCCCTCCCCTAG
Seq C2 exon
GTGGAGTGGCTCCGGAACGAGGACCTGGTGGACCCGTCCCTGGACCCCAATGTATACATCACGCGGGAGCACAGCCTGGTGGTGCGACAGGCCCGCCTTGCTGACACGGCCAACTACACCTGCGTGGCCAAGAACATCGTGGCACGTCGCCGCAGCGCCTCCGCTGCTGTCATCGTCTACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113763-UNC5A:NM_133369:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(34.1=88.6)
A:
NA
C2:
PF0767911=I-set=PD(63.7=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGAACTTCGAGCAGGAGCC
R:
GACGTGCCACGATGTTCTTGG
Band lengths:
245-364
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)