GgaINT0019305 @ galGal4
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr13:9656653-9657009:-
Coord C1 exon
chr13:9656906-9657009
Coord A exon
chr13:9656834-9656905
Coord C2 exon
chr13:9656653-9656833
Length
72 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
GACGTCCCCGTGCCCTGCAGGTG
3' ss Score
10.22
Exon sequences
Seq C1 exon
ATCTGCGCAAGAACTTCGAGCAGGAGCCGACAGCTAGGGAGGTGTCCATCGAGCAGGGTGTTGTGCTGCCGTGCCGCCCTCCCGAGGGCATCCCTCCCGCCGAG
Seq A exon
GTGAGCCGGGGGTGATGCGCCAGGGGTCTCCGCCTGCCCCTTTGTGCCCGGTGACGTCCCCGTGCCCTGCAG
Seq C2 exon
GTGGAGTGGCTGCGCAATGAGGAGCTGGTGGACCCGGCGCTGGATGCCAATGTCTTGGTGACGCCGGAGCACAGCCTGGTGCTGCGCCAAGCCCGCCTGGCCGACACCGCCAACTACACCTGCGTGGCCAAAAACATCGTGGCGCGCCGCCGCAGTGCCTCCGCCGCCATCACCGTCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.033
Domain overlap (PFAM):
C1:
PF0767911=I-set=PU(34.1=88.6)
A:
NA
C2:
PF0767911=I-set=PD(63.7=95.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCATCGAGCAGGGTGTTG
R:
CAGGTGTAGTTGGCGGTGTC
Band lengths:
183-255
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]