BtaINT0157549 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014897 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr7:39685506-39686930:+
Coord C1 exon
chr7:39685506-39685670
Coord A exon
chr7:39685671-39686741
Coord C2 exon
chr7:39686742-39686930
Length
1071 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GGCTGCACTCTCTCCCACAGCTG
3' ss Score
9.3
Exon sequences
Seq C1 exon
TGGATGGCAGCTGGAGCCCATGGAGCAAATGGTCGGCCTGTGGGCTCGACTGTACCCACTGGCGGAGCCGTGAGTGCTCAGACCCCGCGCCCCGCAATGGAGGCGAGGAGTGCCAAGGCACTGACCTGGATACCCGCAATTGTACCAGCGACCTCTGTGTGCACA
Seq A exon
GTGAGTCCTTTCCACCCAGGAGCCCTCTTGAGTTTGCCAGGATTGGCCCTGCCCGCCCTGGGGCAGTGATGGCTCAGGGAGTCAGTCCCCTGCCACAGGCTGCACCTCCTATTCAAAGCTCAGGACCTCTGGGGGACACCCCCATCCTTAACACACCCAACATGTGCCCACATACACCCCAATACTTCCCACACCTGCCCTGAAACTTGCATACGTCGGTGGTTTTACCATGCACACCGAGCCTCTGGGATTGTCTCCCAAACCCCTTCCCATCCTCTCCTACAGTTTTACCTCTGCCCCGTCCCCCAAGTGCACATACAAGTCCTGTGGGGACACCAGGCTTGTGAGGCCTGTTAATTACAAGGCCATAACTAACAATTAAAGATCTCTGTTGGATTTTTTTTCTCTAGAACACACCCTCCCCCATTCTTTCAATTAAAAACCTAATTATCTGTGTCAATTCCTTTCTGATGGACATTTCTTTCATTATGCAAAACCCTTCTAAAATCAATATCGCCTCCTCCGGGCAGTCAATCACTCTCTCCTTAGCCCTGCCCCAGGCCGGGGTGGCGGGGTGGAGGGTGGGGAGGGGATGGGGGAGGTGGGGAGCAGGCAGAAGAGAAGAGCCCAGCATCCCTGCTCCAGGTCCAGGGGTTGGCCCGGAATCAGATTGGCAGAATCCCCCACCCCCACCCCCTGCCCCAGAAAGCAGATTCCCTGCTTGAGGGATCCTAGGCGCTCACCCTCAGTCTCAGCTGCCCCTGGCCCCATGGCCCCAGAAGAACCGGTTTAGCCGGGAAAGTGGCTCTTCCCCACCTCCATTCTCTGTCAGCAGCAGCTTCACTATGAATTGAGCCGGTGAGGCATGCCGCCTGCCCAGAGTGACACAGTGAGGTGGTGGCAGATGCAGGACTGGAATGCATGCGCGCTGATATTTCATGCCGCTTGCTGCTACCCCCGGCGCTGATGCCCAAGGAGCGGAGGCCCCATCCCCCTGCAGTGTAGACTGCTCGCCTCTCCTTTCTGGCCTCCTGCCCTCTACCCCTCTCAAGGCTGCACTCTCTCCCACAG
Seq C2 exon
CTGCTTCCGGCCCAGAGGACGTGGCCCTCTATGTGGGCCTCATAGCTGTGGCGGTATGCCTCCTCTTGCTGCTGCTCGTCCTCATTCTTGTGTACTGCCGCAAGAAGGAGGGATTGGACTCGGACGTGGCCGACTCGTCCATCCTCACCTCAGGCTTCCAGCCCGTCAGCATCAAGCCCAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014897:ENSBTAT00000043831:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=91.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGAGCCCATGGAGCAAATG
R:
GCTTTGCTGGGCTTGATGCT
Band lengths:
342-1413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]