RnoINT0160595 @ rn6
Intron Retention
Gene
ENSRNOG00000059840 | Unc5a
Description
unc-5 netrin receptor A [Source:RGD Symbol;Acc:621755]
Coordinates
chr17:10159389-10161032:-
Coord C1 exon
chr17:10160868-10161032
Coord A exon
chr17:10159578-10160867
Coord C2 exon
chr17:10159389-10159577
Length
1290 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GATGGTGCTTTCTCTTGCAGCCG
3' ss Score
10.65
Exon sequences
Seq C1 exon
TGGATGGGAGCTGGAGTTCGTGGAGTAAGTGGTCAGCCTGTGGGCTTGACTGCACCCACTGGCGGAGCCGCGAGTGCTCTGACCCAGCACCCCGCAATGGAGGTGAGGAGTGTCGGGGTGCTGACCTGGACACCCGCAACTGTACCAGTGACCTCTGCCTGCACA
Seq A exon
GTGAGTCTTCTCGGCCCTGGGGCTCACCTCAATTTGACGGTTGGCCCTATCCAACTCGAGGTCAGGGCAGCCACTCTCGTGCCGTGTAGACTGTGTCTCCTTTTCGTGTCTAGCACACCCTTCCCTGTGTCACACAGTCACTCCACCTTCCTCCTGAGACATGCACAGATGTGAACCTTGACTCTCGTACACCCATCTGCTCTCCTACAGCCTTGGAATTACCCCATCCCCCAAGTGTCCACCTAAGTCCTGTGGGGGTGCTGGGCTTGTGAGGCCTGTTAATTACAAGGCTATAACTAACAATTAAAGATCTCTGTTGGATTTTTTTCTCCTACAGCCTACACCCTCCCCTATTCTTTCAATTAAAAACCTAATTATCTGTGTCAATTCCTTTCTGACAGACATTTCTTCCATTATGCAAAACTCTTAAAAATCGATAACGCTTCCTCCGAGCGGTTGGTCCCCCCCCGCCCACCCCAATTGTCAGGATGGTGGTGTCCGTGAGGGCTCAAACTGACCTGGGAACCCCTGAGAAACCGTTCGCCTGTGCATCTGCCTAGTTTCTGTTCCCGTAATGGAACGGCAAAAGGAATCGATTCGTTTTAGAGGCTCACATTCCAAATGGCGTGGTGTTGGCTCCAGCAAAGGTGCCCGCCACCCCGAGCCACAGTGCTTAGTGGCCAGTGGTACCCTGCCAGTACTGTGTACAAGAGAGAGATCACAGGTCAGGAAGAGAGAAAGAGGCATGAAAGAGACAGGTAGACACAGAGAGATGGGCAGCCCTGTGCTCTGAGAACAGCCCTCATGATGACGTAATGACTTCCCACTGGGCCACACCTCTTAAAAGGTTGCACTGCCACTCACATCACCACAGCGGGGACCACACCTGTGATACACGAATCCCAAGGCAGGCCTATGCAAACTATAGCACCATACCTGTAGTATCCCAGGAGTTCATAGCCCACAGGACTGGTTGCCCCAGCCACCCTGACCCCCCAGCCTAGGAGCCAAGGATAGACCACTCACCCCAGGGAAGAAGCTCTTCCCATTCTCCACTCTCCTGGAAACCTCAAGCAAAACCTTATGCCTGTAGGGATGTGACTTGTTCAGTCCCAAGCCATGTTGTGACATGTATGGGACTAGAATGTGTGCACCAATACCATGCTCCCTCCCTCATGTCCTCTGGCCCAGGGAGTGCTGAGATTTTATTCTCCTAGGGGATAGACCAAGGACCTCTCCTGTGAAGCCCCTACAACCCTGCCATTCTCAAGATGGTGCTTTCTCTTGCAG
Seq C2 exon
CCGCTTCTGGCCCCGAGGACGTGGCTCTCTACATCGGCCTTGTCGCTGTGGCTGTGTGCCTCTTCTTGCTGTTGCTGGCCCTTGGCCTCATTTACTGTCGCAAGAAGGAAGGGCTGGACTCCGATGTGGCCGACTCGTCCATCCTCACCTCGGGCTTCCAGCCTGTCAGCATCAAGCCCAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000059840:ENSRNOT00000087397:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGCTGGAGTTCGTGGAGTA
R:
CTTTGCTGGGCTTGATGCTGA
Band lengths:
345-1635
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]