GgaINT0042388 @ galGal4
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
netrin receptor UNC5B precursor [Source:RefSeq peptide;Acc:NP_001026396]
Coordinates
chr6:11354522-11355293:+
Coord C1 exon
chr6:11354522-11354686
Coord A exon
chr6:11354687-11355260
Coord C2 exon
chr6:11355261-11355293
Length
574 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
AACTTTGTTTTTCCTAACAGATA
3' ss Score
10.6
Exon sequences
Seq C1 exon
TGGACGGTGCATGGACGGAGTGGAGCAAGTGGTCAGCATGCAGCACCGAGTGCACCCACTGGCGCAGCCGCGAGTGCTCTGCACCGGCTCCGCGCAACGGCGGCAAGGATTGCAGCGGCGGGCTGCTCGACTCCAAGAACTGCACCGATGGGCTCTGCCTGCACA
Seq A exon
GTGAGTATGCTGCACTGAAAGAAACGTTGCCTTAGAGCTAGCTGTCAGCTGGTGTTAAGGCTTGGGGGATTTCTGGTGGCTGCCGTGGGATCTAGCTGTCCCACAAGGTGCTAGGTTTGGGGTCTATGCTGAAATAATGCTGGTTGTTGGCAGTGGAGGTGGTCCACTTGGTTTCCTTAGCCCCACTGTGAAAATGTCAGTGCTCAGCAAGAGCTCTGGAGCAGCAGCAGCTAGCATCCAGGTTTATAGGGAAAAAGCAGCACTAGTGATGCGTGTGGCACTGCAAGCAGGCTCACGGAAGGCTAATGCTGCCACCTGCTGCTGTGTGACATCAATTTCCCCCTTCTCAGCCCCGAAAGCCTCCTGCTCCAGCATTAGAGTAGGGGTTTGGGACATGTATCTCAGGACAGTGAAAATTTGGCAGTGGGGATGATGAAGGCATGGTGGTAGCAGAGCCACCTGCGGAGCTCCCCCATATCCCTGCACCCTGCCCGGCTGTGCCTGCCTTTTGTGTCATTCCACCCCCATCATGCCATCTTCACCTTTTGTTTTCTAACTTTGTTTTTCCTAACAG
Seq C2 exon
ATAAAAGAGTTCTAAGCGAACCCAAAAGCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=PD(1.9=1.8),PF0009014=TSP_1=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGACGGTGCATGGACGG
R:
GGTGGCTTTTGGGTTCGCTTA
Band lengths:
198-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]