RnoINT0160612 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30352220-30354286:-
Coord C1 exon
chr20:30354254-30354286
Coord A exon
chr20:30352415-30354253
Coord C2 exon
chr20:30352220-30352414
Length
1839 bp
Sequences
Splice sites
5' ss Seq
GCCGTAAGT
5' ss Score
10.11
3' ss Seq
TAACCCTACTGCGTCTACAGCCC
3' ss Score
5.94
Exon sequences
Seq C1 exon
ATCAGAGAACTCTAAACGACCCTAAAAGCCGCC
Seq A exon
GTAAGTCCCATTTCACGCCTCTCTTCTTTCTTCTGGGGATTCCTGGCTCTCCTTGGCTGGCTTTCCATGGGTGTGGGGTCCAAGGCAGGAAGGGTTGATGTTATTTCCTCCCAGTACAACCCCACAGGATCCCTGCACGTCAAGCATGTTGCCACACTTCTGTCACGGAGAGGCAATGAGACTCTCGGCTGACAGAAAGGCCCCAGACTCCCCCTTACACTCACTCCTGTTAGAGAATGGGAAACTGAGTCTCAGAGGAGGAGGAAGAAACCTGTCCAAGGAACATCCAGGGAGTAGCACAGCCAGGACTTGAACCTAAATATTTTTGTGGCCAAAGCAGGTGGTCTTAGTGTTTGTCCCTCTGGGACTCTCTCAGGAGACAGTGGTGTGCCCATCCACCTCTGCACCATGCCCTATCCCTAGCCCTGGGCCGCACCTCCCAGCTTAACACTGGTCTGAGTGCTGCTGCCTGGAGTCAGCTCCCAAAGGACTCCCCTCCCACCCCAAGGGCCCTTACCGCTGTGACAGCAATGTCAGGGCAACACAGCCTCTCTTTCAGAGCAGCCTGTGGTAATTGAAGAACAATTTCCAGATAGTTCCGGAATCATAAAATCTGCAGGGAAGTCTTCCACTCACTGAGAGGACAGGCCGGGGGCTGGTTTAGAGGGTATAAATCACCAAGCAAGTGGCCCTCAGTGTGAGTGTGGACTTGATTAGATTGTGGGGCCAGGTTTAGGGGAGAGCGTGCTCCAGCTAAGACAGGAGCCTCCGGAGAAGTGGGAGCCCAGCCTTGAGGAAGAGTTGGTAGCGCCTCCCAAGGTTGCCAGGATGCTGCGGGAGTGGGAGGTGGGGTGGGGGTGGGGGGGATTGTTGAGGTGAGGTAGAGAGTTTCCCAGAGCAGGAAGCCATGGCCTTCCATGCTACGAGGTGTGACTGTGGGCTGGTCTAAGGGTGCAGAAAGCCAGGCGTAACTCGGGCTCCCTCTCCCAGAGTTCCCTGTTTTTAATGATGCACAGGTGATTCTTGGAGCTCCCAAAAGAAGTTAGGTCAAAGAGCAGCTGTTGGGTAGCCTCCATTTTGCTGCGCCTGAGCTGGCTGGTGTGCTAGTTACCATGGGTGGCTTTTAAAATTCTTGTATCACTTAATTAAAACTAAATTCATTAGGAAACACAGCTCCTCGACTGCAGCCCTCACAGCTTAGCCTTCAGTAGCCACAAACTCAGGATGATGGGGCCAGGATATTTCCACCCTTCTAGAATGATCTGTGGACCCTGCACATTCCTGCTTAGTAGCAGAGCGTAGTAATTTTGCAGCCCCGCCCCCTGCTGGAGGAAGGCAGTGAACCTGAACCTGTGCTGTGGCCTCCCCGGGTGCCATCTTTCTTTCACCATCTGCTCGCCACCTCTCCATCCATTGCTCTGCCTCTCATCCCACCCCTACCCCCACTGCAGCTCCCACCCGATGCATAGTGAAGAGACTACTTAAGATGGTTTCGGGGGGAACCAGGATGTTTGGCCTTATGGAAGTTGTTGTGGGCTCGCAGCAAAGCTTTATCACGTAGGTAGATTCGTGTTTCCGAGCCTCACACCGCTGGCTCCTCAGCAGGGAGCCAGACTGAGCTCGTGAATCAGACCTGTTGGTTCCATCCCCTTCCTTCCACACTGTACCGGGAGGGCGGGCAATAGGGTGGAGACTTTGTGACAACTTATTAAGGGAGAGTAGCTTGTGAGACTTGCCTGAGGCCACCATCTATCTGCCTTGGCGGGTGAAGCCTAGAATCTAGATTTTCCTTGGTACCCCAAAGGGCCTGCCCCTCACTTAACCCTACTGCGTCTACAG
Seq C2 exon
CCCTGGAGCCGTCGGGAGACGTGGCGCTGTATGCGGGCCTCGTGGTGGCCGTCTTTGTGGTTCTGGCAGTTCTCATGGCTGTAGGAGTGATCGTGTACCGGAGAAACTGCCGGGACTTCGACACGGACATCACTGACTCCTCTGCTGCCCTCACTGGTGGTTTCCACCCCGTCAACTTCAAGACTGCAAGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.153
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGAGAACTCTAAACGACCCT
R:
GGGCCTTGCAGTCTTGAAGTT
Band lengths:
226-2065
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]