GgaINT0042389 @ galGal3
Intron Retention
Gene
ENSGALG00000004569 | UNC5B
Description
NA
Coordinates
chr6:12866516-12867468:+
Coord C1 exon
chr6:12866516-12866548
Coord A exon
chr6:12866549-12867273
Coord C2 exon
chr6:12867274-12867468
Length
725 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
ATTTCTCTCCTCCCTCCCAGTGC
3' ss Score
9.98
Exon sequences
Seq C1 exon
ATAAAAGAGTTCTAAGCGAACCCAAAAGCCACC
Seq A exon
GTAAGTGCTCATTTCATGGCCATTTGATTTCTTTTGCACTGCATCGCTTTGGTTTCACCCGTGGCAGGGCTCTGTGTTGTCTGCTGGGGAAGGACAGGGTGGGAAGTGGGAACAACTAAAACCTGCCTCAAAACTCCTATGTGCATTATATCATGTGCTGTGCTTGAGAAGCTACAACGATGACTTTGCTTTCTTGCTCTGCTCCTATCCCCCTTTTGCTGCTGGCTGCATGCAGTTCTTGGGTAGAGCATGATGCACCTGGTGTCGCTCCACCAAAGATGCTCTAAGCATCATCACCCTAACCAAGGACACCCTTCCTCGAGCTGGGAGCCCCAGAGTTATTTTTTCAATATCAACTCATCCCAAGCCTGACACTGGTGGATGAGGGGTTGAACCTTTCCTTCTGGCCTACAGCTTCCCTGTTCTTCCCTCTCCTTTCTGGGCAGATTTCTTCCTCTGTCCCCCATCCAAGATATACCAAGTATTTAAAGATCAAGAGCCCTGTGGTAGGGTTAGAGGTGGTGAGGATGCTGAGGGCTGTCTGTATGGACGTTACGACACTTGATCTTTCCAGGTGAATGTATTGCTTGGGTATATATATATGATATGCACATAGGTATTGTGTTTGCTCCTCGGGGCTATCTGTTAAGATAGTAGGGTTGATGACTTTGAGCTGAAGCTGAATAAACCTAATGTTCAACCTTGATTTCTCTCCTCCCTCCCAG
Seq C2 exon
TGCTGGAGGCCACGGGTGATGTAGCCCTGTATGCCGGTCTGGTGGTGGCCATTTTTGTCTTCATTGTCATCCTCATGGCTGTGGGGGTTGTGGTGTACCGGAGGAGGTGCCGGGACTTTGACACCGACATCACAGATTCATCAGCTGCCCTGACTGGAGGCTTCCACCCCGTCAACTTCAAGACTGCCCGGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004569:ENSGALT00000033690:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTAAGCGAACCCAAAAGCCA
R:
CCGGGCAGTCTTGAAGTTGAC
Band lengths:
214-939
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]