MmuINT0170596 @ mm9
Intron Retention
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 homolog B (C. elegans) [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60237714-60239965:-
Coord C1 exon
chr10:60239933-60239965
Coord A exon
chr10:60237909-60239932
Coord C2 exon
chr10:60237714-60237908
Length
2024 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
TAACCCTACTGCCTCTACAGCCC
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATCAGAGAACTCTAAACGACCCTAAAAGCCACC
Seq A exon
GTAAGTCCCATTTCATGCCTCTCTTCTTTCTTCTGGGGATTCCTGGCTCTCCTTGGCTGGCTTTCCATGGGTGTGGGGTCCAAGGCAGGGAGAAATGATGTTTTTTCCTCCCAGTAAAACTCTATAGGCTCCCTGTACCTCATGCATGCTGCCACGCTTCTGTCATAGAGAGGCAGTGAGACTCTCGGCTGTCAGAAAGGCCCCCCGACTCCCCCTGACACTCCCGTTACAGAATGGGAAACTGAGTCTCAAAGGAGAAAGAAACCTGTCCAAGTAACAAAACCAGGATTTGAGCCCACATATTTTTGTGGCCAAAGCAGGTGGACATGCCGGGAGACAGTGACATGCCTGTTCACCTCTGTGCACCACACCGTATCTATCCCTAGCAACTGGGCCACACCCCCCAACTTAACCCTGATCTGAGTGCTGCTGCCCGGAGTCAGCTCCCAAAGGACTCCCCTCCCACCCCAAGGGCCCTTAGTGCTGTGACAGCAATATCAGGGCAGCACAGCCTCTCCTTCAGACCAGCCTGTGGTAATTAAAGAACAATTTCCAGATCATTCTGCAGGGAAGGTTTCAGCTCAGCAAGAGGCCAGGCCCAGGGCTAATGCAGAGAGTGTAAATCACCAAGCAAGTGGCCCCCAGTGTGAGTGTGGAGCTGAGCTTAGAGATGAGCCTGTCCCTGCTGGGACGAGCCTCCTGAGAAGTGGGAGCCCAGCCCTGAGGAAGAGTCTCTAGCACCTCCTGGCTTGTCAGGGTGCCGGGTGGGGTGGGGGAGTGGGGGTGCCCCAGTGAGATTGTTGAGGTAAGGTAGAGACAGTGTTCCCAGAGCAGGAAGCCATGGCCTCCTATGCTACAAGATGTGGCTGTGGGCTCACCCAAGGGTGCAGGCCAGGCTGGACCTTAGGCTACCTCTTCCAGAGACCCCTGTTGGTTTTTTTTGGGGGGGGGGGAGGTTGTTTGTTTGTTTTGTTAAGATTTATTTACTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCTAGAAGAGGGCATCGAATCCTATTACAGATGATTGTGAGCCATTGTGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGGAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCTCCAGCCCAAGTCCCCTGTTTTTAATGAAGCCCCGGTGCTTCTTAGCACTCCTGAAAGACAGTTAGGTCAGAGAGCAGCTGTCAGGTGGCCTCCACTTTGCTGTGCCTGAGTTGGCTGGTGTGTTAGTAGTCATTGACCCTGGGTGGCTTTTAAAATTCATATTTCACTTCATTAAAACTAAATTCATTAGGAAACATAGCTCCCCAGTTGCACCAGTCACATCTTAGTCGTCAGTAGCCACATTAGGTCTACTTGAGCATTCCCAGGATGAAGGGAACAGGATATTTCTGTCCTTCTAGAATGATCTGTGGACCCCTGCCTGGCAGTGCATAATTATTTACAACTGCAGCCCCTGCTGGTGGAAGGCAGTATTGCTTCGCTGTGGGCTCCCTGGGTTCCATCTTTCTTTCCCATCCCTCTCACCACCTCTCCATCCATTGCTCCGCCTCTCACCCCACGTGCTTCCCTCCCTCCACTGCACCTCCCATCCAATGCATAGTGAAGAGACTACTTAAGATGGTTTCGGGGAGCCAGGACGTTTGGTTGTATGGGAATTGTAGGTTTGGAGCGAAGCTTTGCCACGTAGGTGGAATCGTGCGCCCTCTGGTTCCCAAGCCTCACACCCCGGGCTCCTCAGCGCTGAGCCACGACTGAGCTCCTGAATCAGACCTACTGGTTCCGTTACATTCTGTACTGTACCAGGAGGGTGAGTGAGCATAGGGTGGGGATTTTGTGACAGCTTACTGAGAAAGAGGTGGATTCAAGGGTTATGAGACTTGCCTGAGGCCACTGATCTGCCTTAGCGGGCAAAGCCTAGAATCTAGATTTTTCCTTGCTACCCCAAAGGGCCTTTCCCTCACTTAACCCTACTGCCTCTACAG
Seq C2 exon
CCCTGGAGACATCGGGAGATGTGGCACTGTACGCAGGCCTTGTGGTGGCCGTCTTTGTGGTGGTAGCGGTTCTCATGGCCGTGGGAGTGATCGTATACCGGAGAAACTGCCGGGACTTCGACACGGACATCACCGACTCCTCTGCGGCCCTCACTGGTGGCTTCCACCCTGTCAACTTCAAGACTGCAAGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099-Unc5b:NM_029770:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: