HsaINT0177873 @ hg38
Intron Retention
Gene
ENSG00000107731 | UNC5B
Description
unc-5 netrin receptor B [Source:HGNC Symbol;Acc:HGNC:12568]
Coordinates
chr10:71288568-71291109:+
Coord C1 exon
chr10:71288568-71288732
Coord A exon
chr10:71288733-71290914
Coord C2 exon
chr10:71290915-71291109
Length
2182 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGGTCCTCCTGTCCCCGCAGTGC
3' ss Score
10.63
Exon sequences
Seq C1 exon
TCGATGGGGCGTGGACGGAGTGGAGCAAGTGGTCAGCCTGCAGCACTGAGTGTGCCCACTGGCGTAGCCGCGAGTGCATGGCGCCCCCACCCCAGAACGGAGGCCGTGACTGCAGCGGGACGCTGCTCGACTCTAAGAACTGCACAGATGGGCTGTGCATGCAAA
Seq A exon
GTGAGTCACAGGGAAGGTGGGGCCCTGGGGGTGGGGACTCTGGAGCCATGTAAGGGTCCCCCAAACCCGGCCCCATGCCTCAGTGCCCAGCCTGCAGCACGGCAGTCCTCAGGGCCTCTGTCCCCCCACCACATCCATCATCTCATCTCATCCTTCCCATTGCCTTCTCTGCCACCCTTTCCCTGTCACCTATGTCATTGTCTTTCCCTTTATTTCCCTTGACAGATAAGAAAACTCTAAGCGACCCCAACAGCCACCGTAAGTCCCATTTCATGGCTGTCCTCTTTCCTCTGGGGGATCCCTGGTTCTCTTTGGCTGGCTTTTCCCGGGATCAGGGTGCAGGGCAGGGAGAGCTGAAGGTGCCTACCCACCCCCCACGGGATCATCTACACCTGACACTGCATGTGTCTGCATCTCCATCACCGGCAGACAGGCAAACCCTTGGCTGACAGAAAAGAAAGGCCTTAGGGCACCCTACTGAGCCTCCTCTCATAAGAGGGGAAACTGAGTCACAGAGAGAGGAAGGGACTTGGCCAGAGACACAGGCAAGAAATAGTAGAGCCAAGATTTGAACCCAAATATTTTTATAGCCAAAGCTGTTGTTCTTAACCATATGCCCTTGGCCCTCCTCTCTGGGCCAAGGCCGGGACATCACCACTCCAGTCCCCCCTCATGCCCCTTGCTGTACCTCTCTGCCCCAGCAGCTGGGCCAAGCCTCCCAAATTGTCTCTGTTGCCCGCTGCCCTGCGTCAGCTCTGGAGGGCTCACCCTCCAGCCCCAGAGGCTGCGCCACCACTGCAATCATATCAGAGCAGCAAAGCCACTTGAGCAGGTTGGCCCATGGTAATTAAACCACAATTTCCAGTTAGTTCTGGAATCATAAAATCAGTGAGGCCCTCGGCCGAGCTCACTGGGGGTCGGGCTGGGGATGATTCAAGTGTAAGTCACCAGGCAAGTGGCCCCAGTGTCAGTGAAGGCATTAGGAGGCAGAGCCAAGCTGGGGGAACCATTTCTCTGCTGAACCAGGAGCCCAGCCCTGAGGGGTCCTCTGGGGAGCCCAAGAGTGAGGGCTGCTGAGGAGAGATACAGGGGGACAGAAGTCGGAAGTGGGCAGACATCCGGGGCTGGGAGCCATGCCCTGCCTTGCTGAAAGCCTTAGGCTGACGCCAAGTGCAGGGTGTGGAGGACTCCAGGCAGAGGAAGCAGGGCTACTTCTCTGAGGGCCCCCCAGGGAGGAAGTGCGTGGACAGGTGCTTCCTGGAGCTCCCAAAGGAAGCAAGGGGAAGAGCAGCCATCTTGGCCGCCATTTTTGCTCTCCCTGAACTGCCCAGTGTGAAAGCCGTTCAAACTTATACTTAGCTTAATTAAAATTAAATAAATTTTTAAATTCAGTTCCTCAGCGGTACTGGCTACATTTGAGTTGTTCAGGAGCCATATGTGACTAGTGGCTGCATACGGGACAGTGCAGCCATAGGATTTTCTACCACTGTAGAAAGCTCCACCAGACAACCCTACTTCAGACCCTGCCACTTTGACCTTGAGGCTTCCCGCCTGGCCATGTTTGCCTGGGGGAGGAAAGTGTAGCCGTGGGTTGCCTCCCTGGGCCCATCCTTCTTCCCACATGCTCACCTCTTCTCCACCGCATTGTTGTGCATCTCATTCCACTTCTTCAGCTCCCCGTCCCTCCACTTCCCACCCTCAGAGCATGGAATGGAAGAAGAGTTCAGAACAGCTACTTACAAAGATAACAGAGCCAGAAGACCTTATCTACATACAAAGATAACAGAGCCAGGACCTTTGGTCCTCTGGAAATTGCTACAGACTCAGAGGTTTCAGCCCCAGCACTCACAGGGCAAATTATGTAGCCCCAGTGACTCTGAGCCACAGACCCTGTCTCATCAGCAGCAAGCAATGAATTAACACATGGCATGAACATGTTTGTTCTTTTGTTTCTCATGCCACAACTAGGAGGGCAGTAAGGCAGGGACTTCGAGCCCATTTTACCGATAGAGAGGTTCAAGGCTAGCCCGAGGTTGCCAGCCTGTGTAGGCAGGGCTCAGACTGGAACTCAGCACCGGGCCGGTTGGCCCTGGGCCCTGCCCTTTCCAGGGACCCAGGGCCTCCCTGATTGCCCCAGGGCCTGGTCTCTGCTGCCCCTTATGTGGTCCTCCTGTCCCCGCAG
Seq C2 exon
TGCTGGAGGCCTCAGGGGATGCGGCGCTGTATGCGGGGCTCGTGGTGGCCATCTTCGTGGTCGTGGCAATCCTCATGGCGGTGGGGGTGGTGGTGTACCGCCGCAACTGCCGTGACTTCGACACAGACATCACTGACTCATCTGCTGCCCTGACTGGTGGTTTCCACCCCGTCAACTTTAAGACGGCAAGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000107731:ENST00000373192:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains