MmuINT1034476 @ mm10
Intron Retention
Gene
ENSMUSG00000020099 | Unc5b
Description
unc-5 netrin receptor B [Source:MGI Symbol;Acc:MGI:894703]
Coordinates
chr10:60774966-60777217:-
Coord C1 exon
chr10:60777185-60777217
Coord A exon
chr10:60775161-60777184
Coord C2 exon
chr10:60774966-60775160
Length
2024 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
TAACCCTACTGCCTCTACAGCCC
3' ss Score
6.99
Exon sequences
Seq C1 exon
ATCAGAGAACTCTAAACGACCCTAAAAGCCACC
Seq A exon
GTAAGTCCCATTTCATGCCTCTCTTCTTTCTTCTGGGGATTCCTGGCTCTCCTTGGCTGGCTTTCCATGGGTGTGGGGTCCAAGGCAGGGAGAAATGATGTTTTTTCCTCCCAGTAAAACTCTATAGGCTCCCTGTACCTCATGCATGCTGCCACGCTTCTGTCATAGAGAGGCAGTGAGACTCTCGGCTGTCAGAAAGGCCCCCCGACTCCCCCTGACACTCCCGTTACAGAATGGGAAACTGAGTCTCAAAGGAGAAAGAAACCTGTCCAAGTAACAAAACCAGGATTTGAGCCCACATATTTTTGTGGCCAAAGCAGGTGGACATGCCGGGAGACAGTGACATGCCTGTTCACCTCTGTGCACCACACCGTATCTATCCCTAGCAACTGGGCCACACCCCCCAACTTAACCCTGATCTGAGTGCTGCTGCCCGGAGTCAGCTCCCAAAGGACTCCCCTCCCACCCCAAGGGCCCTTAGTGCTGTGACAGCAATATCAGGGCAGCACAGCCTCTCCTTCAGACCAGCCTGTGGTAATTAAAGAACAATTTCCAGATCATTCTGCAGGGAAGGTTTCAGCTCAGCAAGAGGCCAGGCCCAGGGCTAATGCAGAGAGTGTAAATCACCAAGCAAGTGGCCCCCAGTGTGAGTGTGGAGCTGAGCTTAGAGATGAGCCTGTCCCTGCTGGGACGAGCCTCCTGAGAAGTGGGAGCCCAGCCCTGAGGAAGAGTCTCTAGCACCTCCTGGCTTGTCAGGGTGCCGGGTGGGGTGGGGGAGTGGGGGTGCCCCAGTGAGATTGTTGAGGTAAGGTAGAGACAGTGTTCCCAGAGCAGGAAGCCATGGCCTCCTATGCTACAAGATGTGGCTGTGGGCTCACCCAAGGGTGCAGGCCAGGCTGGACCTTAGGCTACCTCTTCCAGAGACCCCTGTTGGTTTTTTTTGGGGGGGGGGGAGGTTGTTTGTTTGTTTTGTTAAGATTTATTTACTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCTAGAAGAGGGCATCGAATCCTATTACAGATGATTGTGAGCCATTGTGTGGTTGCTGGGATTTGAACTCAGGACCTTTGGGAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCTCCAGCCCAAGTCCCCTGTTTTTAATGAAGCCCCGGTGCTTCTTAGCACTCCTGAAAGACAGTTAGGTCAGAGAGCAGCTGTCAGGTGGCCTCCACTTTGCTGTGCCTGAGTTGGCTGGTGTGTTAGTAGTCATTGACCCTGGGTGGCTTTTAAAATTCATATTTCACTTCATTAAAACTAAATTCATTAGGAAACATAGCTCCCCAGTTGCACCAGTCACATCTTAGTCGTCAGTAGCCACATTAGGTCTACTTGAGCATTCCCAGGATGAAGGGAACAGGATATTTCTGTCCTTCTAGAATGATCTGTGGACCCCTGCCTGGCAGTGCATAATTATTTACAACTGCAGCCCCTGCTGGTGGAAGGCAGTATTGCTTCGCTGTGGGCTCCCTGGGTTCCATCTTTCTTTCCCATCCCTCTCACCACCTCTCCATCCATTGCTCCGCCTCTCACCCCACGTGCTTCCCTCCCTCCACTGCACCTCCCATCCAATGCATAGTGAAGAGACTACTTAAGATGGTTTCGGGGAGCCAGGACGTTTGGTTGTATGGGAATTGTAGGTTTGGAGCGAAGCTTTGCCACGTAGGTGGAATCGTGCGCCCTCTGGTTCCCAAGCCTCACACCCCGGGCTCCTCAGCGCTGAGCCACGACTGAGCTCCTGAATCAGACCTACTGGTTCCGTTACATTCTGTACTGTACCAGGAGGGTGAGTGAGCATAGGGTGGGGATTTTGTGACAGCTTACTGAGAAAGAGGTGGATTCAAGGGTTATGAGACTTGCCTGAGGCCACTGATCTGCCTTAGCGGGCAAAGCCTAGAATCTAGATTTTTCCTTGCTACCCCAAAGGGCCTTTCCCTCACTTAACCCTACTGCCTCTACAG
Seq C2 exon
CCCTGGAGACATCGGGAGATGTGGCACTGTACGCAGGCCTTGTGGTGGCCGTCTTTGTGGTGGTAGCGGTTCTCATGGCCGTGGGAGTGATCGTATACCGGAGAAACTGCCGGGACTTCGACACGGACATCACCGACTCCTCTGCGGCCCTCACTGGTGGCTTCCACCCTGTCAACTTCAAGACTGCAAGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020099:ENSMUST00000077925:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.278 A=NA C2=0.015
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types