BtaINT0157567 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014270 | UNC5B
Description
Bos taurus unc-5 homolog B (C. elegans) (UNC5B), mRNA. [Source:RefSeq mRNA;Acc:NM_001099029]
Coordinates
chr28:27589545-27591620:+
Coord C1 exon
chr28:27589545-27589577
Coord A exon
chr28:27589578-27591425
Coord C2 exon
chr28:27591426-27591620
Length
1848 bp
Sequences
Splice sites
5' ss Seq
ACCGTAAGT
5' ss Score
10.43
3' ss Seq
CAGCCCTCCTGTCCCCACAGTCC
3' ss Score
9.42
Exon sequences
Seq C1 exon
ATAAGAAAACTCTAAGTGACCCCAAAAGCCACC
Seq A exon
GTAAGTCCCATTTCATGGCTGTCCTCTTTCCTCTGGGGGGACCCCTGGTTTTCCTTGACCGGTTTTTTCAAGGGGTGGAGTGCAGGGCAGGGCAAGGGGCAGGGAGAGTTGAAGGTGCCCCCCTACAAGCTCTGTGGGGTTCCCGGCGCCCAACCCTGCATGTGGCATGGTCTCCATCACCGTCAGACAGGCAGACCCTAAGCTGAAAGAAGGGCCCCCAGGGACTGTCTTGGCCTTCCCATTTAGGAGAAGAAACTGAGTCTCAGAGAGAAGGGACTTACCCAAGGATCCAGTTAGGATTGGAACCTAAATATTTGGCTAGAGCTTCTGCTCCTAGCCCCACCCCTCGGTTTTCCTCTGCGGGGTGGGGCCAGCAGGCAAGCCCACACCTACCCCTCCCAGTGCCTCTCACTGTTCCCCCCAGCAGCCAACGGACACCTCCTGGGTCCCTGGGACACCCGCTGCCCTGCGTCAGCCCCCCGGGGCTGTGCTGCAGCTTGGGCAGATTGGCCTGTGGTAATTAAGCCACAATTTCCAAATAATTCCAGAATTATAAAATCAGTAGTGAGGCCCTGAATGCAGCTCACAGCGGGGGCAGACTGGTGACTGATTAGATATTGTAAATCACCAGGCAAGTGACCACCCCCCATGATAGTGATGACGTGATGAGGCAGAGTCCCCAGAGAGATGGGAGCCCAAGAATGAGGAGAGATGGAGGTCTAGCAGGTGATGGAATCAGCCAAACCTCAGGGCTGAGGGCCCTGCCTGACCTTGCTGAAGCTCAGGCCTCCCGCCAGTTCAGGCAGGAAAGCTGGCCTCCCTCTCTGAGGGCCCCTGGGGGTTGGGGGAGAGTAGACAGGGCCTTCCCCGAGCTCCCAGAGGAAATGGGGTGGGGTGGGGGCAGCCGTCTTGGCTCTACTGCGCTGTCCAGCATAGTAGCCGCTAGACGTGTGTGGCTTGAAAATTCTATTTATCTTAGCTGAAAATAAATATGTCCAAAAACTTTTCCTCAGCCCAGCCAGCCACATTTTAGTTGTTTAATAACCGCACGTGGCTGGCAGCTGTCATGGAAAACAGCATAGACATGGGATTCACCATCTTCCTAGAAAGTTCTGCTGAACAGAACACCTCTCTGCCTGGCCGTGTGGAGCTGATTCGAGCTGTGCAGCAGCCTGCCCTGCCCACTGTCCAGGGCGGGGTGTCCTCCAGCCTAGCAGCCTGTCTGGGGTGGGGAGTGTAACCTGGGGTTGCCTCCCTGAGCCCCTTCCTTCCCTTCTAGCTCTCCCTTCCCTTCCCTCCTCTCCATCCATTACCATGCATCTCATTCTCCTCCTCCTGCTTTCCCTCCCCCTCCCGCCCTCAGCCCAGAATGGAAATGAGCTCAGAGTGGCTACTTGCAGAGATTTCTGGGAACCAGGACCTTGGGTCCTACGGAGATTGCTGCAGGCTGCAATTGAGGCCCTGGGTTTACTCCCACCTTGGACAGGACACTCTGTGGCCTCCTGATTTTGAGCCACAGGCCCTGTCACCTCCTGAGCAGAGAGCAGTGACTTCACTCTTGGAAGTGTCCACCTCAAGAGTGCCTGTGCCTCTCCTTACTACACTGGGAAGGAAGCAGAGCATGGGGACAGGGGCATTTAGATCGGTAAACTTATAGAGACTGATGCTCAGAGAGGTTCAAGGCTTGCCTGAGGTCGCCAGCCTGTCTGGCAGAGCTAAGATTTAAACCCAGGACAGCGCCAGTCTATCCCAGGCCCTGCCTCTCCCCGGGGACCAAGGGAGTCTCTGGCTCCCCCAAGGCCTGGGTCTCTGCCCCCTGCCCCTCACTCAGCCCTCCTGTCCCCACAG
Seq C2 exon
TCCTGGAGACCTCGGGGGACATGGCGCTGTATGCGGGCCTCGTGGTGTCCATCTTCGTGGTGGTGGCCGTCCTCATAGTGGTGGCGGTGGTGGTGTACCGCCGCAACTGCCGGGACTTTGACACCGACATCACCGACTCATCCGCCGCCCTCACCGGCGGCTTCCACCCAGTCAACTTCAAGACTGCAAGGCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014270:ENSBTAT00000018961:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=NA C2=0.030
Domain overlap (PFAM):
C1:
PF150281=PTCRA=FE(9.5=100)
A:
NA
C2:
PF150281=PTCRA=PD(23.3=40.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACTCTAAGTGACCCCAAAAGC
R:
GGGCCTTGCAGTCTTGAAGTT
Band lengths:
222-2070
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]