RnoINT0160611 @ rn6
Intron Retention
Gene
ENSRNOG00000000567 | Unc5b
Description
unc-5 netrin receptor B [Source:RGD Symbol;Acc:621756]
Coordinates
chr20:30354254-30354643:-
Coord C1 exon
chr20:30354479-30354643
Coord A exon
chr20:30354287-30354478
Coord C2 exon
chr20:30354254-30354286
Length
192 bp
Sequences
Splice sites
5' ss Seq
TGAGTGAGT
5' ss Score
6.51
3' ss Seq
CCCTTTATTTCCCTTGACAGATC
3' ss Score
11.98
Exon sequences
Seq C1 exon
TGGATGGAGCGTGGACTGAGTGGAGCAAGTGGTCCGCCTGCAGCACAGAGTGTGCGCACTGGCGCAGCCGCGAGTGCATGGCACCGCCGCCCCAGAACGGAGGCCGCGACTGCAGCGGGACGCTACTTGACTCCAAGAACTGCACCGATGGGCTGTGCGTGCTGA
Seq A exon
GTGAGTGCTCTGGAGAAGGGTGACAGGCCCCTCTGCCCTGGCCCAGCCTTTGGCTACTGTGCTCATTCTGAGCAGAGCAGCCAGAGAGCCTCTGCCCTCCATCTCATCCATACCACGCCCCCGTCACCTCCTCTGCCACCCTTTCTCTGTCACCTGGGTCATTATGGTCTTTCCCTTTATTTCCCTTGACAG
Seq C2 exon
ATCAGAGAACTCTAAACGACCCTAAAAGCCGCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000567:ENSRNOT00000038537:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.018 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=85.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGAGCGTGGACTGAGTG
R:
GGCGGCTTTTAGGGTCGTTTA
Band lengths:
196-388
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]