HsaINT0177856 @ hg38
Intron Retention
Gene
ENSG00000113763 | UNC5A
Description
unc-5 netrin receptor A [Source:HGNC Symbol;Acc:HGNC:12567]
Coordinates
chr5:176870370-176874156:+
Coord C1 exon
chr5:176870370-176870534
Coord A exon
chr5:176870535-176873967
Coord C2 exon
chr5:176873968-176874156
Length
3433 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GGCCATGCTGTCTCCCGCAGCTG
3' ss Score
9.19
Exon sequences
Seq C1 exon
TGGACGGCAGCTGGAGCCCGTGGAGCAAGTGGTCGGCCTGTGGGCTGGACTGCACCCACTGGCGGAGCCGTGAGTGCTCTGACCCAGCACCCCGCAACGGAGGGGAGGAGTGCCAGGGCACTGACCTGGACACCCGCAACTGTACCAGTGACCTCTGTGTACACA
Seq A exon
GTGAGTCCTCTCTGCCCTGAGGTCCTCTTCTGTTTGCCTGGATTGGCCTTGCCCAGCCCTGGGGAGGTGGGGGCTGAGGGAGCTATTCTCCTGCCAAAGGCTGTAGCCTCTCCAGGCTCAGGACCCACTGAGATCCCCCTCATCCTTAGCATACCTGCACATGGGCCCAGGCGCGCCCCACCACCTCCCATGCCTCCTGAGACGGGCACAGATTTGAACCTTGATTCATGCACACCCATTGCCCACACTTACCCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACGCTCACCCCACACCACAGCTTCCCATCTGCCCACGCTCACCCCACACCACAGCTTCCCATCTGCCCACGCTCACCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACGCTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAGCACCACAGCTTCCCATCTGTCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACTCACCCCACACCACAGCTTCCCATCTGCCCACACTCACCCCACACCACAGCCTCACATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGTCCACGCTCACCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGTCCACGCTCACCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACTCACCCCACACCACAGCTTCCCATCTGCCCACACTCACCCCACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGTTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACTCACCCCACACCACAGCTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCTGGTCCCCCAAGTGCACATACAGGTCCTGTGGGAATGCCGGGCTTGTGAGGGCTGTTAATTACAAGGCCATAACTAACAATTAAAGATCTCTGTTGGATTTTTTTTTTTCCTCTAGAACATACCCTCCCCCATTCTTTCAATTAAAAACCTAATTATCTGTGTCAATTCCTTTCTGATGGACATTTCTTCCATTTATGCAAAACCCTTCTAAAATCAATATAGCTTCCTCCAAGCAGTCAATCACCCCCTCCCCAGACCTGCCCCAGGCCTTGGGGAGGCAGACAGAGAGAAGGGCCCCCAAACCCCTGCTCCTGGTCTAGGCACTGACCTGGAACCACACAGGAGGCAGACCCTGTGCTCTGGGGATCCCAGGAGTTCACCCCCAGCCCAAGCTGCCCTTGTCCCAGAAGAGCAGGCAGCAGGTTCAACCTAGCAGCCAGGCACCAGGTTATCCGCTCTGGGGAAGTAGCTCTTCCCCTCCTGCATCCTCCAGGCAGCAGACTCAGCTGGGATCTCAAGCCCACGAGGAATGTGATTTGCTCAGAGTCACACAGCACAGTAATGGCAAATACAGGGCTGGGATGCACACGCACGGACTCCATGCTCCCTGCCACAAGCGTCTGCTCCCTAGCTAGTGCAGATGCCCCGGGGTGCAGACCTCATCCTCCTGGGGTGCAGACCACTGACCTCTCCTTCCCAGACTCCTACACCCCTGCCCCCACCAAGGCCATGCTGTCTCCCGCAG
Seq C2 exon
CTGCTTCTGGCCCTGAGGACGTGGCCCTCTATGTGGGCCTCATCGCCGTGGCCGTCTGCCTGGTCCTGCTGCTGCTTGTCCTCATCCTCGTTTATTGCCGGAAGAAGGAGGGGCTGGACTCAGATGTGGCTGACTCGTCCATTCTCACCTCAGGCTTCCAGCCCGTCAGCATCAAGCCCAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113763:ENST00000329542:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=91.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains