GgaINT0019308 @ galGal3
Intron Retention
Gene
ENSGALG00000018998 | UNC5A
Description
NA
Coordinates
chr13:10412948-10413374:-
Coord C1 exon
chr13:10413210-10413374
Coord A exon
chr13:10413173-10413209
Coord C2 exon
chr13:10412948-10413172
Length
37 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
GGCATGGGGGGGGCCCTCAGTGT
3' ss Score
-0.97
Exon sequences
Seq C1 exon
TGGATGGAGACTGGTCAAAGTGGAGCAAGTGGTCGGTGTGTGGGGCCGAGTGCACACACTGGCGGAGCCGGGAGTGCTCTGAGCCTGCACCCCGCAACGGAGGTCAGGAGTGCCACGGCCCCGAGCTGGAGACCCACAACTGCACCTCCGAGCTGTGCAGCCCCA
Seq A exon
GTGAGTGCCATGGGGAGGGCATGGGGGGGGCCCTCAG
Seq C2 exon
TGTGCCCACGGGGTGCTGATAATCTGCCCCACGCAGCCACCCCAGGTGCTGAGGACCTGGCGCTGTACGTGGGGCTGATCGCCGTGGCCGTATGCCTGGTGCTGCTGCTGCTGGTGGGCGTGCTGGTGTACTGCCGCAAGAAGGGCGGCCTGGACGCCGATGTGGCAGACTCCTCCATCCTCACCACTGGCTTCCAGCCCGTCAGCATCAAGCCCAGCAAGGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000018998:ENSGALT00000029975:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.134 A=NA C2=0.010
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=91.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGCTCTGAGCCTGCAC
R:
CAGATTATCAGCACCCCGTGG
Band lengths:
120-157
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]