HsaINT0177856 @ hg19
Intron Retention
Gene
ENSG00000113763 | UNC5A
Description
unc-5 homolog A (C. elegans) [Source:HGNC Symbol;Acc:12567]
Coordinates
chr5:176297371-176301157:+
Coord C1 exon
chr5:176297371-176297535
Coord A exon
chr5:176297536-176300968
Coord C2 exon
chr5:176300969-176301157
Length
3433 bp
Sequences
Splice sites
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
3' ss Seq
GGCCATGCTGTCTCCCGCAGCTG
3' ss Score
9.19
Exon sequences
Seq C1 exon
TGGACGGCAGCTGGAGCCCGTGGAGCAAGTGGTCGGCCTGTGGGCTGGACTGCACCCACTGGCGGAGCCGTGAGTGCTCTGACCCAGCACCCCGCAACGGAGGGGAGGAGTGCCAGGGCACTGACCTGGACACCCGCAACTGTACCAGTGACCTCTGTGTACACA
Seq A exon
GTGAGTCCTCTCTGCCCTGAGGTCCTCTTCTGTTTGCCTGGATTGGCCTTGCCCAGCCCTGGGGAGGTGGGGGCTGAGGGAGCTATTCTCCTGCCAAAGGCTGTAGCCTCTCCAGGCTCAGGACCCACTGAGATCCCCCTCATCCTTAGCATACCTGCACATGGGCCCAGGCGCGCCCCACCACCTCCCATGCCTCCTGAGACGGGCACAGATTTGAACCTTGATTCATGCACACCCATTGCCCACACTTACCCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACGCTCACCCCACACCACAGCTTCCCATCTGCCCACGCTCACCCCACACCACAGCTTCCCATCTGCCCACGCTCACCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACGCTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACGCTCACCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAGCACCACAGCTTCCCATCTGTCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACTCACCCCACACCACAGCTTCCCATCTGCCCACACTCACCCCACACCACAGCCTCACATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCGCCCCACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGTCCACGCTCACCAACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGTCCACGCTCACCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACTCACCCCACACCACAGCTTCCCATCTGCCCACACTCACCCCACACCACAGCTTCACATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCGCCCCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGCTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACCTGCCCCAACACCACAGTTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCACATCTGCCCACACTCACCCCACACCACAGCTTCCCATCTGCCCACACTCACCCAACACCACAGCTTCCCATCTGCCCACACTCACCAACACCACAGCTTCCCATCTGCCCACACTCGCCCAACACCACAGCTTCCCATCTGCCTGGTCCCCCAAGTGCACATACAGGTCCTGTGGGAATGCCGGGCTTGTGAGGGCTGTTAATTACAAGGCCATAACTAACAATTAAAGATCTCTGTTGGATTTTTTTTTTTCCTCTAGAACATACCCTCCCCCATTCTTTCAATTAAAAACCTAATTATCTGTGTCAATTCCTTTCTGATGGACATTTCTTCCATTTATGCAAAACCCTTCTAAAATCAATATAGCTTCCTCCAAGCAGTCAATCACCCCCTCCCCAGACCTGCCCCAGGCCTTGGGGAGGCAGACAGAGAGAAGGGCCCCCAAACCCCTGCTCCTGGTCTAGGCACTGACCTGGAACCACACAGGAGGCAGACCCTGTGCTCTGGGGATCCCAGGAGTTCACCCCCAGCCCAAGCTGCCCTTGTCCCAGAAGAGCAGGCAGCAGGTTCAACCTAGCAGCCAGGCACCAGGTTATCCGCTCTGGGGAAGTAGCTCTTCCCCTCCTGCATCCTCCAGGCAGCAGACTCAGCTGGGATCTCAAGCCCACGAGGAATGTGATTTGCTCAGAGTCACACAGCACAGTAATGGCAAATACAGGGCTGGGATGCACACGCACGGACTCCATGCTCCCTGCCACAAGCGTCTGCTCCCTAGCTAGTGCAGATGCCCCGGGGTGCAGACCTCATCCTCCTGGGGTGCAGACCACTGACCTCTCCTTCCCAGACTCCTACACCCCTGCCCCCACCAAGGCCATGCTGTCTCCCGCAG
Seq C2 exon
CTGCTTCTGGCCCTGAGGACGTGGCCCTCTATGTGGGCCTCATCGCCGTGGCCGTCTGCCTGGTCCTGCTGCTGCTTGTCCTCATCCTCGTTTATTGCCGGAAGAAGGAGGGGCTGGACTCAGATGTGGCTGACTCGTCCATTCTCACCTCAGGCTTCCAGCCCGTCAGCATCAAGCCCAGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000113763-UNC5A:NM_133369:6
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.173 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0009014=TSP_1=WD(100=91.1)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)